AT1G17300

alanine aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5926636 .. 5927784
1149 bp
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UTR
Exon/CDS
Intron
AT1G17300.1

Sequence Viewer

Length: 351 bp
ATGACACATTCGAGTCAAGCTGCGAGAGATTTGCATGTAAGCAAGGAGATGAAGAAAGAGCCACTTAAGGGAGAAAAAGATAGCTTAAGAAGAATCCCAAGGGGTGGCTCAAACCCTATACAGATTGACAAGGATCAGGAGAAAGCATCAGTTAGAGGAGAAAAAGATAGCTTCCGAAGAGTCCCTACTCCTACTCCTGCTTCTTCATCGCGTCACTTGTCTGCTTCTTCTTCCGATATCTCTGCTTCTGATTCCTCTTCCTCTCTTCCCGTAACTCTTGACTCCATCAATACCAAGGTTCTCAAATATGAGTATGCTGTCCGTGGAGAAATTATCAACATTGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

9.52

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 104
AccII CGCG 1 cut(s) 211
AclWI GGATC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 68, 104
AflII CTTAAG 2 cut(s) 65, 85
AluBI AGCT 3 cut(s) 20, 84, 171
AluI AGCT 3 cut(s) 20, 84, 171
AlwI GGATC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 169, 201
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 293
BcgI CGANNNNNNTGC 4 cut(s) 13, 47, 224, 258
BfrI CTTAAG 2 cut(s) 65, 85
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmsI GCATC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 98, 294, 322
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 104
BseDI CCNNGG 3 cut(s) 98, 294, 322
BseLI CCNNNNNNNGG 2 cut(s) 68, 104
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 68, 104
BsmFI GGGAC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 133
BspFNI CGCG 1 cut(s) 211
BspPI GGATC 1 cut(s) 141
BspTI CTTAAG 2 cut(s) 65, 85
BssECI CCNNGG 3 cut(s) 98, 294, 322
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 98, 294
Bst6I CTCTTC 3 cut(s) 172, 262, 270
BstAFI CTTAAG 2 cut(s) 65, 85
BstDSI CCRYGG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 38
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 322
BtgZI GCGATG 1 cut(s) 192
CseI GACGC 1 cut(s) 200
CviAII CATG 1 cut(s) 35
CviJI RGCY 5 cut(s) 20, 61, 84, 108, 171
CviKI_1 RGCY 5 cut(s) 20, 61, 84, 108, 171
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 3 cut(s) 172, 262, 270
EarI CTCTTC 3 cut(s) 172, 262, 270
Eco130I CCWWGG 2 cut(s) 98, 294
Eco32I GATATC 1 cut(s) 238
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 98, 294
ErhI CCWWGG 2 cut(s) 98, 294
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 119, 309, 315
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HgaI GACGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 38
HinfI GANTC 5 cut(s) 13, 93, 180, 251, 281
Hpy188I TCNGA 3 cut(s) 176, 235, 250
Hpy188III TCNNGA 2 cut(s) 137, 278
HpyCH4V TGCA 1 cut(s) 34
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 122, 210
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 212, 271
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 8 cut(s) 64, 102, 189, 195, 219, 222, 249, 257
MluCI AATT 1 cut(s) 330
MlyI GAGTC 3 cut(s) 22, 189, 275
MnlI CCTC 3 cut(s) 149, 265, 271
MseI TTAA 2 cut(s) 66, 86
MspCI CTTAAG 2 cut(s) 65, 85
MvnI CGCG 1 cut(s) 211
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 38
PfeI GAWTC 2 cut(s) 93, 251
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 3 cut(s) 21, 188, 275
PpsI GAGTC 3 cut(s) 21, 188, 275
SaqAI TTAA 2 cut(s) 66, 86
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 3 cut(s) 22, 189, 275
SetI ASST 4 cut(s) 22, 86, 173, 300
SfaNI GCATC 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 65, 85
SmoI CTYRAG 2 cut(s) 65, 85
Sse9I AATT 1 cut(s) 330
StyI CCWWGG 2 cut(s) 98, 294
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 330
TfiI GAWTC 2 cut(s) 93, 251
Tru1I TTAA 2 cut(s) 66, 86
Tru9I TTAA 2 cut(s) 66, 86
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 65, 195
TspGWI ACGGA 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 104
Vha464I CTTAAG 2 cut(s) 65, 85
XceI RCATGY 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.