FvH4_6g35870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017538
Physical Location & Seq
Reverse (-)
28280129 .. 28282368
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35870.t1

Sequence Viewer

Length: 444 bp
ATGATCCCACTGATATCAGATCCCAATTGTGACTTTACTATCTTTTGTTACAGGACTCTTGTAAGTATATATCAACCACTACAGCATAATATCTTCCCTACCACTCCAATCATAAGCTTCAAACTTATCTCAACACAATCACACTTCACTCACAAACCAGAATCCATAGAGTTACAGAAAAGATCAGATATGAAGGCCTGGTCTACAGTTCTTGCTGCACTGATTCTTGCACTTTCTATGGTACTATCAACCTGGCCGAATGGAGCAACAGCACAAGCTCGTCCGCTAAAATCTGCCCCGGCAAACCTAGCTTCATCATCTTCAGAATCCCTCAATGATTTGCAGGCAAACAGTAAGAGACCTTTTAAGCTGGCTAGCTCGAGCTTCCGAAGAATCCCACCTAGTACTTCAAATCCCACGCAGAACAAGTACGGTCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.23

Weight (kDa)

9.8

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017538)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17285 AT1G17285 AT1G17300 AT1G17300 AT5G50443
fragaria_vesca FvH4_6g35870
malus_domestica MD09G1172400.v1.1
prunus_persica Prupe.3G030800_v2.0.a1 Prupe.3G030800_v2.0.a1
rosa_rugosa Rorug02G0403000
rosa_samantha Rh2AG459900 Rh2CG447200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 203
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 3 cut(s) 243, 406, 431
AgsI TTSAA 2 cut(s) 121, 411
AjnI CCWGG 2 cut(s) 197, 251
AluBI AGCT 6 cut(s) 117, 278, 311, 370, 378, 384
AluI AGCT 6 cut(s) 117, 278, 311, 370, 378, 384
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 2 cut(s) 195, 254
ApeKI GCWGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 199, 253
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 3 cut(s) 308, 375, 402
BfmI CTRYAG 2 cut(s) 80, 204
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 3 cut(s) 199, 253, 299
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 434
BmrFI CCNGG 3 cut(s) 199, 253, 299
BmtI GCTAGC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 199, 253
BseDI CCNNGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 2 cut(s) 197, 256
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 2 cut(s) 197, 256
Bso31I GGTCTC 1 cut(s) 352
BsoBI CYCGRG 1 cut(s) 379
Bsp143I GATC 3 cut(s) 3, 19, 182
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 197, 256
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 3, 19, 182
Bst2UI CCWGG 2 cut(s) 199, 253
Bst4CI ACNGT 3 cut(s) 208, 353, 434
BstC8I GCNNGC 3 cut(s) 345, 372, 376
BstKTI GATC 3 cut(s) 6, 22, 185
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 3, 19, 182
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 2 cut(s) 199, 253
BstSCI CCNGG 3 cut(s) 197, 251, 297
BstSFI CTRYAG 2 cut(s) 80, 204
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 2 cut(s) 197, 256
BtsIMutI CAGTG 2 cut(s) 8, 218
Cac8I GCNNGC 3 cut(s) 345, 372, 376
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 3 cut(s) 242, 405, 430
CviJI RGCY 9 cut(s) 117, 197, 256, 278, 311, 370, 374, 378, 384
CviKI_1 RGCY 9 cut(s) 117, 197, 256, 278, 311, 370, 374, 378, 384
CviQI GTAC 3 cut(s) 242, 405, 430
DpnI GATC 3 cut(s) 5, 21, 184
DpnII GATC 3 cut(s) 3, 19, 182
EaeI YGGCCR 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 197, 251
EcoRV GATATC 1 cut(s) 15
FaiI YATR 8 cut(s) 68, 70, 87, 113, 167, 191, 239, 442
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 3 cut(s) 308, 375, 402
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 197, 256
HapII CCGG 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 5 cut(s) 55, 161, 223, 326, 393
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 19, 187, 325, 389
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 208, 353, 434
HpyCH4V TGCA 3 cut(s) 218, 230, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
Kzo9I GATC 3 cut(s) 3, 19, 182
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 9 cut(s) 37, 171, 184, 211, 238, 265, 312, 329, 356
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 3 cut(s) 308, 375, 402
MaeIII GTNAC 3 cut(s) 29, 47, 171
MalI GATC 3 cut(s) 5, 21, 184
MboI GATC 3 cut(s) 3, 19, 182
MboII GAAGA 3 cut(s) 85, 312, 402
MfeI CAATTG 1 cut(s) 25
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 1 cut(s) 341
MseI TTAA 1 cut(s) 366
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 3 cut(s) 199, 253, 299
MunI CAATTG 1 cut(s) 25
MvaI CCWGG 2 cut(s) 199, 253
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 299
NdeII GATC 3 cut(s) 3, 19, 182
NheI GCTAGC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 379
PceI AGGCCT 1 cut(s) 197
PfeI GAWTC 4 cut(s) 161, 223, 326, 393
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 197, 251
PspGI CCWGG 2 cut(s) 197, 251
PspPI GGNCC 1 cut(s) 434
PspXI VCTCGAGB 1 cut(s) 379
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 3 cut(s) 243, 406, 431
RsaNI GTAC 3 cut(s) 242, 405, 430
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 3, 19, 182
Sau96I GGNCC 1 cut(s) 434
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 3 cut(s) 199, 253, 299
SfcI CTRYAG 2 cut(s) 80, 204
Sfr274I CTCGAG 1 cut(s) 379
SinI GGWCC 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 1 cut(s) 25
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 1 cut(s) 284
SspMI CTAG 3 cut(s) 308, 375, 402
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 3 cut(s) 197, 251, 297
TaaI ACNGT 3 cut(s) 208, 353, 434
TaqI TCGA 1 cut(s) 380
TasI AATT 1 cut(s) 25
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 4 cut(s) 161, 223, 326, 393
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 15, 225
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 206, 303
TspRI CASTG 2 cut(s) 15, 225
VpaK11BI GGWCC 1 cut(s) 434
XhoI CTCGAG 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 203
XspI CTAG 3 cut(s) 308, 375, 402
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.