AT1G17455

ELF4-Like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011812
Physical Location & Seq
Forward (+)
5997057 .. 5998599
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17455.2

Sequence Viewer

Length: 345 bp
ATGGAAGGAGATGTGTTGTCAGGATTTGGAGACAGACACAATATGGATGGGAAATTGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATTTTGGACCAAAACCGATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCAGATAACTTGGGTCGAAACGTGGGGTTGATCAAAGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTATGGTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGTGGAACTTTGAAATCTGATGGGAAAGCTAACCAGAAGAGATTTAGATCCGGTTAG

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

6.27

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 5.3e-38 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17455 AT1G17455 AT1G72630
fragaria_vesca FvH4_6g34620 FvH4_6g34620
prunus_persica Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1
pyrus_communis pycom09g10210
rosa_chinensis RchiOBHm_Chr2g0145141
rosa_laevigata RLG00000020129
rosa_multiflora Rmu_sc0002506.1_g000028
rosa_roxburghii Rroxscaffold_2G00100840
rosa_rugosa Rorug02G0390600
rosa_samantha Rh2AG443300 Rh2BG454300 Rh2CG430300 Rh2DG464200
rosa_wichuraiana Rw2G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 330
AgsI TTSAA 2 cut(s) 92, 301
AluBI AGCT 4 cut(s) 78, 196, 221, 317
AluI AGCT 4 cut(s) 78, 196, 221, 317
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 245, 293
AsuNHI GCTAGC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BccI CCATC 2 cut(s) 41, 302
BclI TGATCA 2 cut(s) 120, 186
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 222, 288
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 256
BmtI GCTAGC 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 334
BsaWI WCCGGW 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 334
BseGI GGATG 3 cut(s) 52, 91, 271
BseJI GATNNNNATC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 6 cut(s) 120, 129, 186, 235, 257, 335
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 68
BssMI GATC 6 cut(s) 120, 129, 186, 235, 257, 335
Bst6I CTCTTC 3 cut(s) 68, 208, 320
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 3 cut(s) 52, 91, 271
BstKTI GATC 6 cut(s) 123, 132, 189, 238, 260, 338
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 6 cut(s) 120, 129, 186, 235, 257, 335
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BtsCI GGATG 3 cut(s) 52, 91, 271
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 1 cut(s) 143
CviJI RGCY 5 cut(s) 78, 196, 221, 225, 317
CviKI_1 RGCY 5 cut(s) 78, 196, 221, 225, 317
DpnI GATC 6 cut(s) 122, 131, 188, 237, 259, 337
DpnII GATC 6 cut(s) 120, 129, 186, 235, 257, 335
Eam1104I CTCTTC 3 cut(s) 68, 208, 320
EarI CTCTTC 3 cut(s) 68, 208, 320
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 44, 144, 231
FatI CATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 120, 186
FokI GGATG 3 cut(s) 59, 98, 278
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 2 cut(s) 222, 288
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 146
HinfI GANTC 2 cut(s) 146, 284
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 245, 293
Hpy188I TCNGA 4 cut(s) 138, 212, 277, 307
Hpy188III TCNNGA 3 cut(s) 21, 70, 92
HpyAV CCTTC 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 61, 254
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 1 cut(s) 146
Ksp22I TGATCA 2 cut(s) 120, 186
Kzo9I GATC 6 cut(s) 120, 129, 186, 235, 257, 335
LguI GCTCTTC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 6, 83, 171, 335
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 222, 288
MaeII ACGT 1 cut(s) 177
MalI GATC 6 cut(s) 122, 131, 188, 237, 259, 337
MboI GATC 6 cut(s) 120, 129, 186, 235, 257, 335
MboII GAAGA 3 cut(s) 85, 225, 337
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 53
MspI CCGG 1 cut(s) 339
NdeII GATC 6 cut(s) 120, 129, 186, 235, 257, 335
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 146, 284
Psp124BI GAGCTC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 103
PsuI RGATCY 1 cut(s) 335
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 68
Sau3AI GATC 6 cut(s) 120, 129, 186, 235, 257, 335
Sau96I GGNCC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 80, 180, 198, 223, 283, 319
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 53
SspMI CTAG 2 cut(s) 222, 288
SstI GAGCTC 1 cut(s) 198
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 149, 172
TasI AATT 1 cut(s) 53
TfiI GAWTC 2 cut(s) 146, 284
TscAI CASTG 1 cut(s) 267
TspDTI ATGAA 2 cut(s) 159, 261
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 103
XspI CTAG 2 cut(s) 222, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.