RLG00000020129

Protein of unknown function (DUF1313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011812
Physical Location & Seq
Reverse (-)
61389533 .. 61390189
657 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020129

Sequence Viewer

Length: 489 bp
ATGGAAGGTGGTATATATACTGGCATAGGAAATGGTACCCAGTTGGACAGCAAGGTTGTGCAGACATTTCAGAAGAGCTTTGTACAAGTACAGGACATTTTGGATCAGAACAGATTGCTAATAAATGAGATTAACCAAAACCATGAGTCCAAGATCCCTGATAACCTCAGCAGGAATGTGGGCTTAATTAGAGAGCTTAACAACAACATTAGAAGGGTGGTAGAACTCTACGCTGATCTCTCCAGCAATTTTTCCAGGTCAATGGAAGCCTCATCAGAAGGTGAATCTGCTGGGACTTTGAAATCGGATGGAAAATCTAGTGAGAAGAGAATTAGATCCGGCATTTTTACTGCCACAAACTATGGTGAAAATCTCAGTATAAAAGTAGCCTTGGAGTCTTCACTTTCAACTCTGGATCCTCTACAGCTGTGTAAATTAGATATCCTTAATGATATGATCAATGCTTTACTGTTTACCATTTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1313

Protein Analysis

163

Amino Acids

17.9

Weight (kDa)

5.04

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 8.8e-41 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17455 AT1G17455 AT1G72630
fragaria_vesca FvH4_6g34620 FvH4_6g34620
prunus_persica Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1
pyrus_communis pycom09g10210
rosa_chinensis RchiOBHm_Chr2g0145141
rosa_laevigata RLG00000020129
rosa_multiflora Rmu_sc0002506.1_g000028
rosa_roxburghii Rroxscaffold_2G00100840
rosa_rugosa Rorug02G0390600
rosa_samantha Rh2AG443300 Rh2BG454300 Rh2CG430300 Rh2DG464200
rosa_wichuraiana Rw2G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AclWI GGATC 5 cut(s) 111, 148, 330, 410, 423
AfaI GTAC 3 cut(s) 37, 84, 90
AgsI TTSAA 3 cut(s) 301, 408, 483
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 78, 196, 427
AluI AGCT 3 cut(s) 78, 196, 427
AlwI GGATC 5 cut(s) 111, 148, 330, 410, 423
Asp718I GGTACC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 293, 377
BamHI GGATCC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 1 cut(s) 456
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 37, 417
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 25, 40
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 181, 388
BseNI ACTGG 2 cut(s) 25, 40
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 6 cut(s) 103, 153, 235, 335, 415, 456
BspCNI CTCAG 2 cut(s) 180, 387
BspLI GGNNCC 2 cut(s) 37, 417
BspPI GGATC 5 cut(s) 111, 148, 330, 410, 423
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 25, 40
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 6 cut(s) 103, 153, 235, 335, 415, 456
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 2 cut(s) 68, 320
BstAUI TGTACA 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 167, 374
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 6 cut(s) 106, 156, 238, 338, 418, 459
BstMBI GATC 6 cut(s) 103, 153, 235, 335, 415, 456
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 3 cut(s) 153, 335, 415
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 3 cut(s) 153, 335, 415
BtsCI GGATG 1 cut(s) 313
Csp6I GTAC 3 cut(s) 36, 83, 89
CviAII CATG 1 cut(s) 143
CviJI RGCY 6 cut(s) 78, 183, 196, 269, 389, 427
CviKI_1 RGCY 6 cut(s) 78, 183, 196, 269, 389, 427
CviQI GTAC 3 cut(s) 36, 83, 89
DdeI CTNAG 2 cut(s) 167, 374
DpnI GATC 6 cut(s) 105, 155, 237, 337, 417, 458
DpnII GATC 6 cut(s) 103, 153, 235, 335, 415, 456
Eam1104I CTCTTC 2 cut(s) 68, 320
EarI CTCTTC 2 cut(s) 68, 320
Eco130I CCWWGG 1 cut(s) 390
Eco32I GATATC 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 1 cut(s) 146
FaiI YATR 8 cut(s) 14, 16, 18, 26, 144, 363, 380, 455
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 456
FokI GGATG 1 cut(s) 320
FspBI CTAG 1 cut(s) 318
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 226
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 146
HinfI GANTC 3 cut(s) 146, 284, 395
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 293, 377
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 4 cut(s) 72, 108, 277, 307
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 207, 272
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 167, 374
Hsp92II CATG 1 cut(s) 146
KpnI GGTACC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 6 cut(s) 103, 153, 235, 335, 415, 456
LguI GCTCTTC 1 cut(s) 68
MaeI CTAG 1 cut(s) 318
MalI GATC 6 cut(s) 105, 155, 237, 337, 417, 458
MboI GATC 6 cut(s) 103, 153, 235, 335, 415, 456
MboII GAAGA 3 cut(s) 85, 337, 390
MflI RGATCY 3 cut(s) 153, 335, 415
MluCI AATT 5 cut(s) 186, 247, 330, 434, 483
MlyI GAGTC 2 cut(s) 155, 404
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 3 cut(s) 176, 280, 429
MseI TTAA 4 cut(s) 132, 185, 198, 447
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
NdeII GATC 6 cut(s) 103, 153, 235, 335, 415, 456
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 37, 417
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 2 cut(s) 154, 403
PpsI GAGTC 2 cut(s) 154, 403
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 37, 417
PsuI RGATCY 3 cut(s) 153, 335, 415
PvuII CAGCTG 1 cut(s) 427
RsaI GTAC 3 cut(s) 37, 84, 90
RsaNI GTAC 3 cut(s) 36, 83, 89
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 132, 185, 198, 447
Sau3AI GATC 6 cut(s) 103, 153, 235, 335, 415, 456
SchI GAGTC 2 cut(s) 155, 404
ScrFI CCNGG 1 cut(s) 256
SetI ASST 8 cut(s) 10, 57, 80, 168, 198, 260, 283, 429
SfcI CTRYAG 1 cut(s) 422
Sse9I AATT 5 cut(s) 186, 247, 330, 434, 483
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 471
TasI AATT 5 cut(s) 186, 247, 330, 434, 483
TatI WGTACW 2 cut(s) 82, 88
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 4 cut(s) 132, 185, 198, 447
Tru9I TTAA 4 cut(s) 132, 185, 198, 447
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.