pycom09g10210

Protein of unknown function (DUF1313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011812
Physical Location & Seq
Forward (+)
8359337 .. 8359681
345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10210.1

Sequence Viewer

Length: 345 bp
ATGGAAGGTGGTATGTTTACAGGTATAGGAAATGGAACACAACTAGATACCAAAGTTGTGCAGACATTCCAGAAGAGCTTTGTGCAGGTGCAAGACATTTTGGATCAGAACCGGTTGCTAATTAACGAGATTAACCAAAACCACGAGTCGAAGATCCCTGATAACCTCAGCCGGAATGTTGGCTTAATTAGAGAGCTTAACAACAACATTAGAAGGGTGGTAGATCTATATGCTGATCTCTCCGGCTCTTTTTCCATGTCAATGGAAGCTTCCTCAGAAGCTGAATCAGGTGGGACTTTGAAATCAGATGGGAAATCGAGCGAGAAGAGAATTAGATCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1313

Protein Analysis

115

Amino Acids

12.56

Weight (kDa)

5.36

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 1.4e-40 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17455 AT1G17455 AT1G72630
fragaria_vesca FvH4_6g34620 FvH4_6g34620
prunus_persica Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1
pyrus_communis pycom09g10210
rosa_chinensis RchiOBHm_Chr2g0145141
rosa_laevigata RLG00000020129
rosa_multiflora Rmu_sc0002506.1_g000028
rosa_roxburghii Rroxscaffold_2G00100840
rosa_rugosa Rorug02G0390600
rosa_samantha Rh2AG443300 Rh2BG454300 Rh2CG430300 Rh2DG464200
rosa_wichuraiana Rw2G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AclWI GGATC 3 cut(s) 111, 148, 330
AgeI ACCGGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 4 cut(s) 78, 196, 269, 281
AluI AGCT 4 cut(s) 78, 196, 269, 281
AlwI GGATC 3 cut(s) 111, 148, 330
AlwNI CAGNNNCTG 1 cut(s) 281
AsiGI ACCGGT 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BauI CACGAG 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 340
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 76
BglII AGATCT 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 111
BseMII CTCAG 2 cut(s) 181, 288
BsgI GTGCAG 2 cut(s) 80, 104
BshTI ACCGGT 1 cut(s) 111
BsiSI CCGG 4 cut(s) 112, 172, 243, 339
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
Bsp143I GATC 5 cut(s) 103, 153, 223, 235, 335
BspCNI CTCAG 2 cut(s) 180, 287
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 3 cut(s) 111, 148, 330
BspQI GCTCTTC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 111
BssMI GATC 5 cut(s) 103, 153, 223, 235, 335
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 68, 320
BstDEI CTNAG 2 cut(s) 167, 274
BstKTI GATC 5 cut(s) 106, 156, 226, 238, 338
BstMBI GATC 5 cut(s) 103, 153, 223, 235, 335
BstSCI CCNGG 1 cut(s) 338
BstX2I RGATCY 3 cut(s) 153, 223, 335
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 3 cut(s) 153, 223, 335
BveI ACCTGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 111
CspAI ACCGGT 1 cut(s) 111
CviAII CATG 1 cut(s) 256
CviJI RGCY 7 cut(s) 78, 171, 183, 196, 246, 269, 281
CviKI_1 RGCY 7 cut(s) 78, 171, 183, 196, 246, 269, 281
DdeI CTNAG 2 cut(s) 167, 274
DpnI GATC 5 cut(s) 105, 155, 225, 237, 337
DpnII GATC 5 cut(s) 103, 153, 223, 235, 335
Eam1104I CTCTTC 2 cut(s) 68, 320
EarI CTCTTC 2 cut(s) 68, 320
FaeI CATG 1 cut(s) 259
FaiI YATR 5 cut(s) 14, 26, 229, 231, 257
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 255
FspBI CTAG 1 cut(s) 44
HapII CCGG 4 cut(s) 112, 172, 243, 339
Hin1II CATG 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 2 cut(s) 146, 284
HpaII CCGG 4 cut(s) 112, 172, 243, 339
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 3 cut(s) 108, 277, 307
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 61, 85, 91
HpyF3I CTNAG 2 cut(s) 167, 274
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 5 cut(s) 103, 153, 223, 235, 335
LguI GCTCTTC 1 cut(s) 68
LpnPI CCDG 8 cut(s) 6, 71, 83, 125, 171, 185, 256, 273
MaeI CTAG 1 cut(s) 44
MalI GATC 5 cut(s) 105, 155, 225, 237, 337
MboI GATC 5 cut(s) 103, 153, 223, 235, 335
MboII GAAGA 3 cut(s) 85, 163, 337
MflI RGATCY 3 cut(s) 153, 223, 335
MluCI AATT 3 cut(s) 120, 186, 330
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 2 cut(s) 176, 283
MseI TTAA 4 cut(s) 123, 132, 185, 198
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 4 cut(s) 112, 172, 243, 339
MspR9I CCNGG 1 cut(s) 340
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 103, 153, 223, 235, 335
NlaIII CATG 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 111
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 3 cut(s) 153, 223, 335
RseI CAYNNNNRTG 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 123, 132, 185, 198
Sau3AI GATC 5 cut(s) 103, 153, 223, 235, 335
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 340
SetI ASST 9 cut(s) 10, 25, 80, 90, 168, 198, 271, 283, 292
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 3 cut(s) 120, 186, 330
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 338
TaqI TCGA 2 cut(s) 149, 317
TasI AATT 3 cut(s) 120, 186, 330
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 4 cut(s) 123, 132, 185, 198
Tru9I TTAA 4 cut(s) 123, 132, 185, 198
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.