Rroxscaffold_2G00100840

Protein of unknown function (DUF1313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011812
Physical Location & Seq
Forward (+)
22735103 .. 22736339
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100840.1

Sequence Viewer

Length: 435 bp
ATGGAAGGTGGTATATATACTGGCATAGGAAATGGTACCCAGTTGGATAGCAAGGTTGTGCAGACATTTCAGAAGAGCTTTGTACAAGTACAGGACATTTTGGATCAGAACAGATTGCTAATATATGAGATTAACCAAAACCATGAGTCCAAGATCCCTGATAACCTCAGCAGGAATGTGGGCTTAATTAGAGAGCTTAACAACAACATTAGAAGGGTGGTAGATCTCTACGCTGATCTCTCCAGCAATTTTTCCAGGTCAATGGAAGCCTCATCAGAAGGTGAATCTGCTGGGACTTTGAAATCGGATGGAAAATCTAGTGAGAAGAGAATTAGATCCGGGGATGGGAAAATGGGCCGCGTAGCGGGGCTCTGTGGAGAATGCCCCGTTCGGCAGTATTTCTTTGTGGAGAAGTCAGATCTTGCACTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1313

Protein Analysis

144

Amino Acids

15.96

Weight (kDa)

5.87

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 1.5e-40 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17455 AT1G17455 AT1G72630
fragaria_vesca FvH4_6g34620 FvH4_6g34620
prunus_persica Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1
pyrus_communis pycom09g10210
rosa_chinensis RchiOBHm_Chr2g0145141
rosa_laevigata RLG00000020129
rosa_multiflora Rmu_sc0002506.1_g000028
rosa_roxburghii Rroxscaffold_2G00100840
rosa_rugosa Rorug02G0390600
rosa_samantha Rh2AG443300 Rh2BG454300 Rh2CG430300 Rh2DG464200
rosa_wichuraiana Rw2G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 360
AciI CCGC 2 cut(s) 358, 365
AclWI GGATC 3 cut(s) 111, 148, 330
AfaI GTAC 3 cut(s) 37, 84, 90
AfiI CCNNNNNNNGG 2 cut(s) 345, 364
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 78, 196
AluI AGCT 2 cut(s) 78, 196
AlwI GGATC 3 cut(s) 111, 148, 330
AoxI GGCC 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 293
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 302, 338
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 1 cut(s) 340
BfaI CTAG 1 cut(s) 318
BglII AGATCT 2 cut(s) 223, 418
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 256, 340
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 256, 340
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 364
Bse1I ACTGG 2 cut(s) 25, 40
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 313, 349
BseLI CCNNNNNNNGG 2 cut(s) 345, 364
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 25, 40
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 345, 364
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 6 cut(s) 103, 153, 223, 235, 335, 418
BspACI CCGC 2 cut(s) 358, 365
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 3 cut(s) 111, 148, 330
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 25, 40
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 6 cut(s) 103, 153, 223, 235, 335, 418
Bst2UI CCWGG 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 68, 320
BstAUI TGTACA 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 313, 349
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 6 cut(s) 106, 156, 226, 238, 338, 421
BstMBI GATC 6 cut(s) 103, 153, 223, 235, 335, 418
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 254, 338
BstUI CGCG 1 cut(s) 360
BstX2I RGATCY 4 cut(s) 153, 223, 335, 418
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 4 cut(s) 153, 223, 335, 418
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 313, 349
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 3 cut(s) 36, 83, 89
CviAII CATG 1 cut(s) 143
CviJI RGCY 6 cut(s) 78, 183, 196, 269, 357, 370
CviKI_1 RGCY 6 cut(s) 78, 183, 196, 269, 357, 370
CviQI GTAC 3 cut(s) 36, 83, 89
DdeI CTNAG 1 cut(s) 167
DpnI GATC 6 cut(s) 105, 155, 225, 237, 337, 420
DpnII GATC 6 cut(s) 103, 153, 223, 235, 335, 418
Eam1104I CTCTTC 2 cut(s) 68, 320
EarI CTCTTC 2 cut(s) 68, 320
Eco24I GRGCYC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 1 cut(s) 146
FaiI YATR 7 cut(s) 14, 16, 18, 26, 124, 126, 144
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 142
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 2 cut(s) 320, 356
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 358
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 146
HinfI GANTC 2 cut(s) 146, 284
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 5 cut(s) 72, 108, 277, 307, 418
HpyAV CCTTC 2 cut(s) 207, 272
HpyCH4V TGCA 2 cut(s) 61, 425
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 146
KpnI GGTACC 1 cut(s) 39
Kzo9I GATC 6 cut(s) 103, 153, 223, 235, 335, 418
LguI GCTCTTC 1 cut(s) 68
MaeI CTAG 1 cut(s) 318
MalI GATC 6 cut(s) 105, 155, 225, 237, 337, 420
MboI GATC 6 cut(s) 103, 153, 223, 235, 335, 418
MboII GAAGA 2 cut(s) 85, 337
MflI RGATCY 4 cut(s) 153, 223, 335, 418
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 186, 247, 330
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 2 cut(s) 176, 280
MseI TTAA 4 cut(s) 132, 185, 198, 433
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 256, 340
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 360
NciI CCSGG 1 cut(s) 340
NdeII GATC 6 cut(s) 103, 153, 223, 235, 335, 418
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 68
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 355
PsuI RGATCY 4 cut(s) 153, 223, 335, 418
RsaI GTAC 3 cut(s) 37, 84, 90
RsaNI GTAC 3 cut(s) 36, 83, 89
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 4 cut(s) 132, 185, 198, 433
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 6 cut(s) 103, 153, 223, 235, 335, 418
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 256, 340
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 10, 57, 80, 168, 198, 260, 283
Sse9I AATT 3 cut(s) 186, 247, 330
SsiI CCGC 2 cut(s) 358, 365
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 254, 338
TasI AATT 3 cut(s) 186, 247, 330
TatI WGTACW 2 cut(s) 82, 88
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 4 cut(s) 132, 185, 198, 433
Tru9I TTAA 4 cut(s) 132, 185, 198, 433
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.