AT1G72630

ELF4-Like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011812
Physical Location & Seq
Forward (+)
27344181 .. 27345585
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72630.1

Sequence Viewer

Length: 360 bp
ATGGAATCAAGAATGGAAGGAGATGTGTATTCTGGATTTGGAGAGAGATACCAAATGGATGGTAAGTTGTTGCAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTTGATCAGAACCGGCTTTTGATCAACGAGATCAATCAGAACCATGAGTCGAAACAAGCTGATCACTTGGGAAGAAATGTTGGTTTGATAAGAGAGCTCAATAACAATATCAGAACTGTTGCAAGTCTTTATGGAGATCTCTCTCATTCTTTTGCTAGATCGGTTGATGCTTCATCGGAAGGCGAATCTACCGGGACATTGAAATCTGACGGTAAGGCCAACAACCAGAAGAGATTTAGATCCGGGTAA

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

6.28

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 18 - 99 1.5e-37 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17455 AT1G17455 AT1G72630
fragaria_vesca FvH4_6g34620 FvH4_6g34620
prunus_persica Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1
pyrus_communis pycom09g10210
rosa_chinensis RchiOBHm_Chr2g0145141
rosa_laevigata RLG00000020129
rosa_multiflora Rmu_sc0002506.1_g000028
rosa_roxburghii Rroxscaffold_2G00100840
rosa_rugosa Rorug02G0390600
rosa_samantha Rh2AG443300 Rh2BG454300 Rh2CG430300 Rh2DG464200
rosa_wichuraiana Rw2G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 76
AgsI TTSAA 3 cut(s) 98, 104, 313
AluBI AGCT 3 cut(s) 90, 170, 208
AluI AGCT 3 cut(s) 90, 170, 208
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 345
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 76
AsuC2I CCSGG 2 cut(s) 304, 355
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 1 cut(s) 53
BclI TGATCA 3 cut(s) 115, 132, 172
BcnI CCSGG 2 cut(s) 304, 355
BfaI CTAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 304, 355
BmrFI CCNGG 2 cut(s) 304, 355
BmsI GCATC 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 304, 355
BsaBI GATNNNNATC 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 349
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 349
BshFI GGCC 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 3 cut(s) 124, 303, 354
BslFI GGGAC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
BspANI GGCC 1 cut(s) 329
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 123
BssMI GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
Bst4CI ACNGT 2 cut(s) 229, 323
Bst6I CTCTTC 2 cut(s) 80, 335
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 7 cut(s) 118, 135, 144, 175, 250, 272, 353
BstMBI GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
BstSCI CCNGG 2 cut(s) 302, 353
BstX2I RGATCY 2 cut(s) 247, 350
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 2 cut(s) 247, 350
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 123
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 90, 127, 170, 208, 329
CviKI_1 RGCY 5 cut(s) 90, 127, 170, 208, 329
DpnI GATC 7 cut(s) 117, 134, 143, 174, 249, 271, 352
DpnII GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
Eam1104I CTCTTC 2 cut(s) 80, 335
EarI CTCTTC 2 cut(s) 80, 335
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 243
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 154
FbaI TGATCA 3 cut(s) 115, 132, 172
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 329
HapII CCGG 3 cut(s) 124, 303, 354
Hin1II CATG 1 cut(s) 158
HinfI GANTC 3 cut(s) 5, 158, 296
HpaII CCGG 3 cut(s) 124, 303, 354
Hpy188I TCNGA 5 cut(s) 120, 150, 224, 289, 319
Hpy188III TCNNGA 5 cut(s) 9, 33, 82, 104, 113
HpyAV CCTTC 2 cut(s) 11, 284
HpyCH4III ACNGT 2 cut(s) 229, 323
HpyCH4V TGCA 2 cut(s) 73, 233
Hsp92II CATG 1 cut(s) 158
Ksp22I TGATCA 3 cut(s) 115, 132, 172
Kzo9I GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
LguI GCTCTTC 1 cut(s) 80
LpnPI CCDG 5 cut(s) 18, 95, 137, 316, 350
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 267
MalI GATC 7 cut(s) 117, 134, 143, 174, 249, 271, 352
MboI GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
MboII GAAGA 3 cut(s) 97, 195, 352
MflI RGATCY 2 cut(s) 247, 350
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 167
MspI CCGG 3 cut(s) 124, 303, 354
MspR9I CCNGG 2 cut(s) 304, 355
NciI CCSGG 2 cut(s) 304, 355
NdeII GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
NlaIII CATG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 5, 296
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 210
PsuI RGATCY 2 cut(s) 247, 350
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 80
Sau3AI GATC 7 cut(s) 115, 132, 141, 172, 247, 269, 350
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 304, 355
SduI GDGCHC 1 cut(s) 210
SetI ASST 3 cut(s) 92, 172, 210
SfaNI GCATC 1 cut(s) 268
Sse9I AATT 1 cut(s) 76
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 302, 353
TaaI ACNGT 2 cut(s) 229, 323
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 76
TfiI GAWTC 2 cut(s) 5, 296
TspDTI ATGAA 1 cut(s) 273
XapI RAATTY 1 cut(s) 76
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.