Rh2BG454300

Protein of unknown function (DUF1313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011812
Physical Location & Seq
Reverse (-)
64293371 .. 64295328
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG454300.1

Sequence Viewer

Length: 345 bp
ATGGAAGGTGGTATATATACTGGCATAGGAAATGGTACCCAGTTGGATAGCAAGGTTGTGCAGACATTTCAGAAGAGCTTTGTACAAGTACAGGACATTTTGGATCAGAACAGATTGCTAATAAATGAGATTAACCAAAACCATGAGTCCAAGATCCCTGATAACCTCAGCAGGAATGTGGGCTTAATTAGAGAGCTTAACAACAACATTAGAAGGGTGGTAGATCTCTACGCTGATCTCTCCAGCAATTTTTCCAGGTCAATGGAAGCCTCATCAGAAGCAGAATCTGCTGGGACTTTGAAATCGGATGGAAAATCTAGTGAGAAGAGAATTAGATCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1313

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

5.81

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 7.6e-41 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17455 AT1G17455 AT1G72630
fragaria_vesca FvH4_6g34620 FvH4_6g34620
prunus_persica Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1 Prupe.3G042600_v2.0.a1
pyrus_communis pycom09g10210
rosa_chinensis RchiOBHm_Chr2g0145141
rosa_laevigata RLG00000020129
rosa_multiflora Rmu_sc0002506.1_g000028
rosa_roxburghii Rroxscaffold_2G00100840
rosa_rugosa Rorug02G0390600
rosa_samantha Rh2AG443300 Rh2BG454300 Rh2CG430300 Rh2DG464200
rosa_wichuraiana Rw2G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AclWI GGATC 3 cut(s) 111, 148, 330
AfaI GTAC 3 cut(s) 37, 84, 90
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 78, 196
AluI AGCT 2 cut(s) 78, 196
AlwI GGATC 3 cut(s) 111, 148, 330
AlwNI CAGNNNCTG 1 cut(s) 287
Asp718I GGTACC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 340
BanI GGYRCC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 1 cut(s) 340
BfaI CTAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 256, 340
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 256, 340
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 25, 40
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 25, 40
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 5 cut(s) 103, 153, 223, 235, 335
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 3 cut(s) 111, 148, 330
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 25, 40
BssMI GATC 5 cut(s) 103, 153, 223, 235, 335
Bst2UI CCWGG 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 68, 320
BstAPI GCANNNNNTGC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 5 cut(s) 106, 156, 226, 238, 338
BstMBI GATC 5 cut(s) 103, 153, 223, 235, 335
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 254, 338
BstX2I RGATCY 3 cut(s) 153, 223, 335
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 3 cut(s) 153, 223, 335
BtsCI GGATG 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 287
Csp6I GTAC 3 cut(s) 36, 83, 89
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 78, 183, 196, 269
CviKI_1 RGCY 4 cut(s) 78, 183, 196, 269
CviQI GTAC 3 cut(s) 36, 83, 89
DdeI CTNAG 1 cut(s) 167
DpnI GATC 5 cut(s) 105, 155, 225, 237, 337
DpnII GATC 5 cut(s) 103, 153, 223, 235, 335
Eam1104I CTCTTC 2 cut(s) 68, 320
EarI CTCTTC 2 cut(s) 68, 320
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 146
FaiI YATR 5 cut(s) 14, 16, 18, 26, 144
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 142
FokI GGATG 1 cut(s) 320
FspBI CTAG 1 cut(s) 318
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 226
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 146
HinfI GANTC 2 cut(s) 146, 284
HpaII CCGG 1 cut(s) 339
Hpy188I TCNGA 4 cut(s) 72, 108, 277, 307
HpyAV CCTTC 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 146
KpnI GGTACC 1 cut(s) 39
Kzo9I GATC 5 cut(s) 103, 153, 223, 235, 335
LguI GCTCTTC 1 cut(s) 68
LpnPI CCDG 9 cut(s) 6, 53, 77, 157, 171, 241, 256, 268, 276
MaeI CTAG 1 cut(s) 318
MalI GATC 5 cut(s) 105, 155, 225, 237, 337
MboI GATC 5 cut(s) 103, 153, 223, 235, 335
MboII GAAGA 2 cut(s) 85, 337
MflI RGATCY 3 cut(s) 153, 223, 335
MluCI AATT 3 cut(s) 186, 247, 330
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 2 cut(s) 176, 280
MseI TTAA 3 cut(s) 132, 185, 198
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 256, 340
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 103, 153, 223, 235, 335
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 3 cut(s) 153, 223, 335
RsaI GTAC 3 cut(s) 37, 84, 90
RsaNI GTAC 3 cut(s) 36, 83, 89
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 132, 185, 198
Sau3AI GATC 5 cut(s) 103, 153, 223, 235, 335
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 256, 340
SetI ASST 6 cut(s) 10, 57, 80, 168, 198, 260
Sse9I AATT 3 cut(s) 186, 247, 330
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 254, 338
TasI AATT 3 cut(s) 186, 247, 330
TatI WGTACW 2 cut(s) 82, 88
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 3 cut(s) 132, 185, 198
Tru9I TTAA 3 cut(s) 132, 185, 198
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.