Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014168

Physical Location & Seq

Genomic Coordinates Forward (+)

6130025 .. 6131627

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTACATCTGCTAGAAGAGCATATGGATTCGGGAGAGCTGACGAGGCGACTCACCCGGACTCCATTAGAGCCACTTTGGCTGAGTTTCTTTCCACGTTCGTCTTCGTCTTTGCTGGAGAAGGCTCAATCCTCGCTCTAGACAAGTTGTATTGGGACACGGCGGCTCACACGGGGACAAACACGCCTGGAGGGTTAGTTCTGGTGGCGTTAGCTCATGCATTGGCCTTGTTCGCGGCTGTTTCTGCAGCCATCAATGTCTCTGGTGGCCACGTCAACCCCGCTGTCACTTTTGCTGCTCTAATCGGAGGCAGGATCTCGGTCATTCGAGCTATCTACTATTGGGTTGCTCAGCTTATAGGTGCTATCCTCGCTTGTCTCTTGTTGAGGCTTGCCACTAATGGCTTGAGACCAGTAGGTTTCCATGTAGCATCAGGAGTTAGTGAGCTTCATGGGCTACTGATGGAGATCATACTTACATTTGCTTTGGTTTATGTTGTCTACTCGACCGCAATCGATCCAAAGAGGGGGAGTATTGGGATCATAGCGCCACTAGCCATCGGGCTCATAGTTGGGGCAAACATTTTGGTGGGAGGACCTTTCGATGGAGCCTCTATGAATCCGGCTAGAGCCTTTGGTCCAGCATTAGTGGGATGGAGGTGGAGTAACCATTGGATCTATTGGGTTGGACCGTTCATTGGTGGTGCACTCGCCGCACTGATCTATGAGTACATGATCATCCCCAGCGTGAACGAACCTCCTCACCACAGTACCCACCAACCATTGGCTCCGGAAGATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006914 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009705 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0021700 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0061919 GO:0071695 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

267

Amino Acids

28.18

Weight (kDa)

6.54

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	17 - 242	5.8e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17810 AT1G73190
fragaria_vesca	FvH4_5g18640
malus_domestica	MD06G1241500.v1.1
prunus_persica	Prupe.5G246100_v2.0.a1
pyrus_communis	pycom06g21660
rosa_chinensis	RchiOBHm_Chr7g0176871
rosa_laevigata	RLG00000005577
rosa_multiflora	Rmu_co8433363.1_g000001 Rmu_sc0002436.1_g000002 Rmu_sc0005310.1_g000053
rosa_rugosa	Rorug06G0401300
rosa_samantha	Rh7AG000700 Rh7BG001300 Rh7CG000700 Rh7DG001000
rosa_wichuraiana	Rw7G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	790
AciI	CCGC	5 cut(s)	164, 236, 282, 510, 714
AclWI	GGATC	4 cut(s)	323, 512, 548, 683
AcoI	YGGCCR	1 cut(s)	268
AfaI	GTAC	2 cut(s)	731, 772
AfiI	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 784
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	187
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	5 cut(s)	41, 215, 332, 355, 448
AluI	AGCT	5 cut(s)	41, 215, 332, 355, 448
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	3 cut(s)	265, 383, 403
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	4 cut(s)	323, 512, 548, 683
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	2 cut(s)	225, 268
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	248, 296
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	596, 638, 689
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	47, 755
AvaII	GGWCC	3 cut(s)	596, 638, 689
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	754, 787
BalI	TGGCCA	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	2 cut(s)	260, 283
BccI	CCATC	5 cut(s)	260, 457, 566, 599, 648
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	735
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	3 cut(s)	265, 383, 403
BfaI	CTAG	5 cut(s)	15, 140, 554, 627, 802
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	5 cut(s)	165, 237, 249, 297, 714
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	5 cut(s)	166, 238, 250, 298, 715
Bme1390I	CCNGG	2 cut(s)	59, 189
Bme18I	GGWCC	3 cut(s)	596, 638, 689
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	596, 638, 689
BmiI	GGNNCC	2 cut(s)	610, 789
BmrFI	CCNGG	2 cut(s)	59, 189
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	97
BpmI	CTGGAG	2 cut(s)	138, 210
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	790
BsaXI	ACNNNNNCTCC	6 cut(s)	47, 77, 183, 213, 649, 679
Bsc4I	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 784
Bse1I	ACTGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	516
BseGI	GGATG	2 cut(s)	659, 738
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 784
BseMII	CTCAG	2 cut(s)	75, 365
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	260, 283
BseYI	CCCAGC	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	227, 270
BshVI	ATCGAT	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	3 cut(s)	59, 623, 791
BslFI	GGGAC	2 cut(s)	170, 190
BslI	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 784
BsmAI	GTCTC	3 cut(s)	265, 383, 403
BsmFI	GGGAC	2 cut(s)	170, 190
BsnI	GGCC	2 cut(s)	227, 270
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	567, 709
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	5 cut(s)	164, 236, 282, 510, 714
BspANI	GGCC	2 cut(s)	227, 270
BspCNI	CTCAG	2 cut(s)	76, 364
BspDI	ATCGAT	1 cut(s)	516
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	610, 789
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	4 cut(s)	323, 512, 548, 683
BspQI	GCTCTTC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	693, 770
Bst6I	CTCTTC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	84, 351
BstF5I	GGATG	2 cut(s)	659, 738
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	7 cut(s)	318, 471, 520, 543, 678, 723, 738
BstMAI	GTCTC	3 cut(s)	265, 383, 403
BstMBI	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
BstMCI	CGRYCG	1 cut(s)	510
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	57, 187
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	260, 283
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	315, 675
BstYI	RGATCY	2 cut(s)	315, 675
Bsu15I	ATCGAT	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	227, 270
BsuTUI	ATCGAT	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	659, 738
BtsIMutI	CAGTG	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	596, 638, 689
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	730, 771
CviAII	CATG	4 cut(s)	218, 425, 452, 733
CviQI	GTAC	2 cut(s)	730, 771
DdeI	CTNAG	2 cut(s)	84, 351
DpnI	GATC	7 cut(s)	317, 470, 519, 542, 677, 722, 737
DpnII	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	3 cut(s)	596, 638, 689
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	4 cut(s)	221, 428, 455, 736
FaqI	GGGAC	2 cut(s)	170, 190
FatI	CATG	4 cut(s)	217, 424, 451, 732
FauI	CCCGC	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	5 cut(s)	165, 237, 249, 297, 714
FokI	GGATG	2 cut(s)	666, 725
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	5 cut(s)	165, 237, 249, 297, 714
FspBI	CTAG	5 cut(s)	15, 140, 554, 627, 802
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	5 cut(s)	165, 237, 249, 297, 714
GsaI	CCCAGC	1 cut(s)	747
GsuI	CTGGAG	2 cut(s)	138, 210
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	227, 270
HapII	CCGG	3 cut(s)	59, 623, 791
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	4 cut(s)	221, 428, 455, 736
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	30, 52, 62, 619
HpaII	CCGG	3 cut(s)	59, 623, 791
HphI	GGTGA	2 cut(s)	47, 755
Hpy166II	GTNNAC	4 cut(s)	277, 502, 707, 751
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	4 cut(s)	34, 140, 435, 791
Hpy8I	GTNNAC	4 cut(s)	277, 502, 707, 751
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	693, 770
HpyCH4IV	ACGT	2 cut(s)	98, 273
HpyCH4V	TGCA	3 cut(s)	221, 248, 707
HpyF3I	CTNAG	2 cut(s)	84, 351
HpySE526I	ACGT	2 cut(s)	98, 273
Hsp92II	CATG	4 cut(s)	221, 428, 455, 736
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	608, 793
Lsp1109I	GCAGC	2 cut(s)	260, 283
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	5 cut(s)	15, 140, 554, 627, 802
MaeII	ACGT	2 cut(s)	98, 273
MaeIII	GTNAC	2 cut(s)	286, 665
MalI	GATC	7 cut(s)	317, 470, 519, 542, 677, 722, 737
MboI	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
MboII	GAAGA	2 cut(s)	30, 97
MflI	RGATCY	2 cut(s)	315, 675
MhlI	GDGCHC	2 cut(s)	567, 709
MlsI	TGGCCA	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	46, 56
MmeI	TCCRAC	1 cut(s)	667
Mox20I	TGGCCA	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	790
MscI	TGGCCA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	3 cut(s)	59, 623, 791
MspR9I	CCNGG	2 cut(s)	59, 189
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	236
NciI	CCSGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
NlaIII	CATG	4 cut(s)	221, 428, 455, 736
NlaIV	GGNNCC	2 cut(s)	610, 789
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	30, 619
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	5 cut(s)	166, 238, 250, 298, 715
PleI	GAGTC	2 cut(s)	46, 56
PpsI	GAGTC	2 cut(s)	46, 56
PpuMI	RGGWCCY	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	610, 789
PspPI	GGNCC	3 cut(s)	596, 638, 689
PspPPI	RGGWCCY	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	315, 675
RsaI	GTAC	2 cut(s)	731, 772
RsaNI	GTAC	2 cut(s)	730, 771
RseI	CAYNNNNRTG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	13
SatI	GCNGC	5 cut(s)	165, 237, 249, 297, 714
Sau3AI	GATC	7 cut(s)	315, 468, 517, 540, 675, 720, 735
Sau96I	GGNCC	3 cut(s)	596, 638, 689
SchI	GAGTC	2 cut(s)	46, 56
ScrFI	CCNGG	2 cut(s)	59, 189
SduI	GDGCHC	2 cut(s)	567, 709
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	3 cut(s)	596, 638, 689
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SsiI	CCGC	5 cut(s)	164, 236, 282, 510, 714
SspMI	CTAG	5 cut(s)	15, 140, 554, 627, 802
StyD4I	CCNGG	2 cut(s)	57, 187
TaaI	ACNGT	2 cut(s)	693, 770
TaiI	ACGT	2 cut(s)	101, 276
TaqI	TCGA	4 cut(s)	328, 506, 516, 603
TaqII	GACCGA	1 cut(s)	310
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	3 cut(s)	167, 239, 716
TfiI	GAWTC	2 cut(s)	30, 619
TscAI	CASTG	1 cut(s)	723
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	248, 296
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	440, 632, 685
TspRI	CASTG	1 cut(s)	723
Van91I	CCANNNNNTGG	1 cut(s)	784
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	3 cut(s)	596, 638, 689
XbaI	TCTAGA	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	5 cut(s)	15, 140, 554, 627, 802
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.