Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014168

Physical Location & Seq

Genomic Coordinates Forward (+)

10711263 .. 10713040

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCCGCAGCCATATCGTAGATATGAGTTTGGGAGGGCCGACGAGGCCACCCACCCCGACTCCATCAGAGCTACTTTAGCCGAGTTCATTGCCACCTTCATCTTTGTCTTTGCTGGGGAAGGCTCTATCCTCGCTCTTGGGAAAATTTACAAGGACAGCGACACATCAGTGGCTGAGTTGATAGCTATAGCTCTAGCGCATGCGTTTGCTCTCTTTTCGGCCATCTCAGCTAGCATTAACATCTCTGGTGGCCATGTCAATCCTGCTGTAACCTTTGGGGCTCTTATTGGTGGAAGGATTTCGGTTGTTCGTGCCTTTTACTACTGGGTGGCTCAGCTCCTAGGGGCTATTGTGGCTTCCCTTGTGCTAAGGCTTGTCACAAATGGCATGAGAACTGTGGGGTTCAACGTCGCCCCTGGTGTTGGCGAGTGGCATGGGCTAGTACTAGAGATTGTGATGACATTTGGTTTAGTTTACACCGTATATGCTACAGCCATTGATCCTAAGAGGGGTAGCTTGGGAACTATAGCACCTCTGGCCATAGGGTTCATTGTTGGCGCAAATATCTTGGTCGGCGGTCCGTTTGATGGAGCATCCATGAACCCGGCAAGGGCATTTGGACCAGCACTGGTAGGGTGGAGATGGAAGAACCACTGGATCTACTGGCTTGGACCATTTATAGGGGGTGGATTGGCAGGTCTCATATATGAATACATGGTCATACCAACAGAGCCCCCCCACACCCACCACACTCACCAGCCCTTGGCTCCCGAGGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006914 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009705 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0021700 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0061919 GO:0071695 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

261

Amino Acids

27.9

Weight (kDa)

6.49

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 236	2e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17810 AT1G73190
fragaria_vesca	FvH4_5g18640
malus_domestica	MD06G1241500.v1.1
prunus_persica	Prupe.5G246100_v2.0.a1
pyrus_communis	pycom06g21660
rosa_chinensis	RchiOBHm_Chr7g0176871
rosa_laevigata	RLG00000005577
rosa_multiflora	Rmu_co8433363.1_g000001 Rmu_sc0002436.1_g000002 Rmu_sc0005310.1_g000053
rosa_rugosa	Rorug06G0401300
rosa_samantha	Rh7AG000700 Rh7BG001300 Rh7CG000700 Rh7DG001000
rosa_wichuraiana	Rw7G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	686
AccB7I	CCANNNNNTGG	1 cut(s)	763
AciI	CCGC	2 cut(s)	5, 576
AclWI	GGATC	2 cut(s)	494, 665
AcoI	YGGCCR	3 cut(s)	219, 250, 537
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 610, 680, 763
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	415
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	71, 185, 191, 230, 337, 516
AluI	AGCT	6 cut(s)	71, 185, 191, 230, 337, 516
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	2 cut(s)	494, 665
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	5 cut(s)	36, 45, 219, 250, 537
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	298
AspA2I	CCTAGG	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	199, 560
AspS9I	GGNCC	4 cut(s)	36, 578, 620, 671
AsuC2I	CCSGG	1 cut(s)	605
AsuHPI	GGTGA	1 cut(s)	746
AsuNHI	GCTAGC	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	3 cut(s)	578, 620, 671
AvrII	CCTAGG	1 cut(s)	340
BalI	TGGCCA	2 cut(s)	252, 539
BanII	GRGCYC	2 cut(s)	283, 735
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	4 cut(s)	71, 230, 581, 636
BcgI	CGANNNNNNTGC	3 cut(s)	30, 71, 105
BciT130I	CCWGG	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	6 cut(s)	194, 231, 341, 440, 446, 781
BfmI	CTRYAG	3 cut(s)	186, 489, 525
BfuAI	ACCTGC	1 cut(s)	686
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	2 cut(s)	5, 8
BlnI	CCTAGG	1 cut(s)	340
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	2 cut(s)	6, 9
BmcAI	AGTACT	1 cut(s)	444
Bme1390I	CCNGG	2 cut(s)	417, 605
Bme18I	GGWCC	3 cut(s)	578, 620, 671
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	4 cut(s)	36, 578, 620, 671
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	2 cut(s)	417, 605
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	602
BmtI	GCTAGC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	4 cut(s)	340, 415, 762, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 610, 680, 763
Bse1I	ACTGG	4 cut(s)	329, 633, 659, 668
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	340, 415, 762, 771
BseGI	GGATG	1 cut(s)	593
BseLI	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 610, 680, 763
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	165, 240, 347
BseNI	ACTGG	4 cut(s)	329, 633, 659, 668
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	5 cut(s)	38, 47, 221, 252, 539
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 610, 680, 763
BsmAI	GTCTC	1 cut(s)	704
BsnI	GGCC	5 cut(s)	38, 47, 221, 252, 539
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	283, 735
Bsp143I	GATC	2 cut(s)	499, 657
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	2 cut(s)	5, 576
BspANI	GGCC	5 cut(s)	38, 47, 221, 252, 539
BspCNI	CTCAG	3 cut(s)	166, 239, 346
BspLI	GGNNCC	1 cut(s)	768
BspMI	ACCTGC	1 cut(s)	686
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	494, 665
BspTNI	GGTCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	4 cut(s)	329, 633, 659, 668
BssECI	CCNNGG	4 cut(s)	340, 415, 762, 771
BssMI	GATC	2 cut(s)	499, 657
BssT1I	CCWWGG	2 cut(s)	340, 762
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	397, 481
BstC8I	GCNNGC	2 cut(s)	201, 232
BstDEI	CTNAG	5 cut(s)	174, 226, 333, 368, 504
BstF5I	GGATG	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	199, 560
BstKTI	GATC	2 cut(s)	502, 660
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	2 cut(s)	499, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 77, 227, 353, 536
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	415, 603
BstSFI	CTRYAG	3 cut(s)	186, 489, 525
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BsuRI	GGCC	5 cut(s)	38, 47, 221, 252, 539
BtsCI	GGATG	1 cut(s)	593
BtsIMutI	CAGTG	3 cut(s)	174, 626, 652
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	2 cut(s)	201, 232
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	199, 560
Cfr13I	GGNCC	4 cut(s)	36, 578, 620, 671
CpoI	CGGWCCG	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	443
CspI	CGGWCCG	1 cut(s)	578
CviAII	CATG	6 cut(s)	200, 254, 388, 434, 598, 715
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	5 cut(s)	174, 226, 333, 368, 504
DpnI	GATC	2 cut(s)	501, 659
DpnII	GATC	2 cut(s)	499, 657
EaeI	YGGCCR	3 cut(s)	219, 250, 537
Eco130I	CCWWGG	2 cut(s)	340, 762
Eco24I	GRGCYC	2 cut(s)	283, 735
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	3 cut(s)	578, 620, 671
Eco88I	CYCGRG	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	340, 762
EcoT38I	GRGCYC	2 cut(s)	283, 735
ErhI	CCWWGG	2 cut(s)	340, 762
FaeI	CATG	6 cut(s)	203, 257, 391, 437, 601, 718
FatI	CATG	6 cut(s)	199, 253, 387, 433, 597, 714
Fnu4HI	GCNGC	2 cut(s)	5, 8
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	2 cut(s)	283, 735
Fsp4HI	GCNGC	2 cut(s)	5, 8
FspBI	CTAG	6 cut(s)	194, 231, 341, 440, 446, 781
GlaI	GCGC	2 cut(s)	198, 559
GluI	GCNGC	2 cut(s)	5, 8
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	38, 47, 221, 252, 539
HapII	CCGG	1 cut(s)	605
HhaI	GCGC	2 cut(s)	199, 560
Hin1II	CATG	6 cut(s)	203, 257, 391, 437, 601, 718
Hin6I	GCGC	2 cut(s)	197, 558
HinP1I	GCGC	2 cut(s)	197, 558
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	770
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	2 cut(s)	44, 413
HpyAV	CCTTC	3 cut(s)	106, 113, 288
HpyCH4III	ACNGT	2 cut(s)	397, 481
HpyCH4IV	ACGT	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 77, 227, 353, 536
HpyF3I	CTNAG	5 cut(s)	174, 226, 333, 368, 504
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	203, 257, 391, 437, 601, 718
HspAI	GCGC	2 cut(s)	197, 558
Kzo9I	GATC	2 cut(s)	499, 657
LmnI	GCTCC	3 cut(s)	342, 590, 772
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	6 cut(s)	194, 231, 341, 440, 446, 781
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	268, 376
MalI	GATC	2 cut(s)	501, 659
MboI	GATC	2 cut(s)	499, 657
MboII	GAAGA	1 cut(s)	658
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	2 cut(s)	283, 735
MlsI	TGGCCA	2 cut(s)	252, 539
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	2 cut(s)	252, 539
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	27, 37, 140, 501, 543, 766
Mox20I	TGGCCA	2 cut(s)	252, 539
MroXI	GAANNNNTTC	1 cut(s)	298
MscI	TGGCCA	2 cut(s)	252, 539
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	2 cut(s)	252, 539
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	417, 605
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	44, 77, 227, 353, 536
NciI	CCSGG	1 cut(s)	605
NdeII	GATC	2 cut(s)	499, 657
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	6 cut(s)	203, 257, 391, 437, 601, 718
NlaIV	GGNNCC	1 cut(s)	768
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	6, 9
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	4 cut(s)	36, 578, 620, 671
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	657
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	167
Rsr2I	CGGWCCG	1 cut(s)	578
RsrII	CGGWCCG	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	5, 8
Sau3AI	GATC	2 cut(s)	499, 657
Sau96I	GGNCC	4 cut(s)	36, 578, 620, 671
ScaI	AGTACT	1 cut(s)	444
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	417, 605
SduI	GDGCHC	2 cut(s)	283, 735
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	3 cut(s)	186, 489, 525
SfiI	GGCCNNNNNGGCC	1 cut(s)	44
SinI	GGWCC	3 cut(s)	578, 620, 671
SmiMI	CAYNNNNRTG	1 cut(s)	167
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	5, 576
SspMI	CTAG	6 cut(s)	194, 231, 341, 440, 446, 781
StyD4I	CCNGG	2 cut(s)	415, 603
StyI	CCWWGG	2 cut(s)	340, 762
TaaI	ACNGT	2 cut(s)	397, 481
TaiI	ACGT	1 cut(s)	411
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	174, 633, 659
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	5 cut(s)	76, 88, 538, 614, 723
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	3 cut(s)	174, 633, 659
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	3 cut(s)	578, 620, 671
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	1 cut(s)	203
XmaJI	CCTAGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	6 cut(s)	194, 231, 341, 440, 446, 781
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.