Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014168

Physical Location & Seq

Genomic Coordinates Forward (+)

24245966 .. 24247079

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCCGCCTCGTAGATATGCCTTTGGGAGGGCCGACGAGGCCACCCACCCTGACTCCATCAGAGCCACTTTAGCTGAATTCGTTGCCACTTTCATCTTTGTCTTTGCCGGGGAAGGCTCTGTTCTTGCTCTTGGGAAGATTTACAAGGATAGCGGCACATCAGCATCTGAACTGATAGCCATAGCTCTTGCACACGCCTTCTCTCTCTTTTCAGCCATCTCAGCCAGCATTAACGTATCTGGTGGCCATGTCAACCCTGCTGTAACCTTCGGTGCTCTTCTAGGTGGAAGGCTATCCGTTATTCGCGCGCTATACTACTGGGTTGCTCAGCTTCTTGGAGCTATTGTGGCTTCTCTTTTGTTAAGGCTTGTCACAAATGGCATGAGGACAGTGGGGTTCAACGTGGCCTCTGGTGTTGCTGAGGTGCATGGGCTAATACTAGAGATTGTGTTGACATTTGGGTTAGTTTACACCGTATATGCCACTGCCATTGATCCCAAGAGGGGTAGCTTGGGAACCATCGCACCACTGGCCATTGGATTCATTGTCGGGGCAAATATCCTGGTGGGCGGGCCGTTTGATGGGGCATGCATGAACCCAGCAAGGGCGTTTGGACCTGCACTGGTAGGGTGGAGATGGAGGAACCACTGGATCTACTGGGTTGGGCCACTCCTGGGAGGTGGGTTGGCGGCTCTCATATACGAGTACATGGTCATACCAACAGAGACGCCACACCACACTCACCAGCCATTGGCTCCAGAGGATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006914 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009705 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0021700 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0061919 GO:0071695 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

257

Amino Acids

27.13

Weight (kDa)

7.1

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 234	3.7e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17810 AT1G73190
fragaria_vesca	FvH4_5g18640
malus_domestica	MD06G1241500.v1.1
prunus_persica	Prupe.5G246100_v2.0.a1
pyrus_communis	pycom06g21660
rosa_chinensis	RchiOBHm_Chr7g0176871
rosa_laevigata	RLG00000005577
rosa_multiflora	Rmu_co8433363.1_g000001 Rmu_sc0002436.1_g000002 Rmu_sc0005310.1_g000053
rosa_rugosa	Rorug06G0401300
rosa_samantha	Rh7AG000700 Rh7BG001300 Rh7CG000700 Rh7DG001000
rosa_wichuraiana	Rw7G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	625
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccII	CGCG	2 cut(s)	306, 308
AciI	CCGC	4 cut(s)	5, 153, 570, 689
AclWI	GGATC	2 cut(s)	488, 659
AcoI	YGGCCR	2 cut(s)	244, 531
AcsI	RAATTY	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	728
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	6 cut(s)	27, 503, 581, 604, 674, 751
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	561, 672
AluBI	AGCT	5 cut(s)	74, 185, 331, 341, 510
AluI	AGCT	5 cut(s)	74, 185, 331, 341, 510
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	2 cut(s)	488, 659
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	7 cut(s)	30, 39, 244, 405, 531, 572, 665
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	2 cut(s)	308, 310
AspS9I	GGNCC	4 cut(s)	30, 572, 614, 665
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	614
BalI	TGGCCA	2 cut(s)	246, 533
Bbv12I	GWGCWC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	420
BccI	CCATC	5 cut(s)	65, 224, 527, 575, 630
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	2 cut(s)	563, 674
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	3 cut(s)	281, 440, 769
BfuAI	ACCTGC	1 cut(s)	625
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	3 cut(s)	5, 154, 690
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	3 cut(s)	6, 155, 691
Bme1390I	CCNGG	3 cut(s)	109, 563, 674
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	4 cut(s)	30, 572, 614, 665
BmiI	GGNNCC	3 cut(s)	517, 644, 756
BmrFI	CCNGG	3 cut(s)	109, 563, 674
BmrI	ACTGGG	2 cut(s)	328, 667
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	2 cut(s)	328, 667
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	108, 673
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 330, 360
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 503, 581, 604, 674, 751
Bse1I	ACTGG	5 cut(s)	323, 534, 627, 653, 662
BseBI	CCWGG	2 cut(s)	563, 674
BseDI	CCNNGG	2 cut(s)	108, 673
BseLI	CCNNNNNNNGG	6 cut(s)	27, 503, 581, 604, 674, 751
BseMII	CTCAG	3 cut(s)	234, 341, 411
BseNI	ACTGG	5 cut(s)	323, 534, 627, 653, 662
BsePI	GCGCGC	1 cut(s)	306
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	2 cut(s)	306, 308
BshFI	GGCC	7 cut(s)	32, 41, 246, 407, 533, 574, 667
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	6 cut(s)	27, 503, 581, 604, 674, 751
BsmAI	GTCTC	1 cut(s)	719
BsmBI	CGTCTC	1 cut(s)	719
BsnI	GGCC	7 cut(s)	32, 41, 246, 407, 533, 574, 667
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	493, 651
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	4 cut(s)	5, 153, 570, 689
BspANI	GGCC	7 cut(s)	32, 41, 246, 407, 533, 574, 667
BspCNI	CTCAG	3 cut(s)	233, 340, 412
BspFNI	CGCG	2 cut(s)	306, 308
BspLI	GGNNCC	3 cut(s)	517, 644, 756
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	2 cut(s)	488, 659
BspQI	GCTCTTC	1 cut(s)	282
BsrI	ACTGG	5 cut(s)	323, 534, 627, 653, 662
BssECI	CCNNGG	2 cut(s)	108, 673
BssHII	GCGCGC	1 cut(s)	306
BssMI	GATC	2 cut(s)	493, 651
BssNI	GRCGYC	1 cut(s)	728
Bst2UI	CCWGG	2 cut(s)	563, 674
Bst4CI	ACNGT	2 cut(s)	391, 475
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	728
BstC8I	GCNNGC	4 cut(s)	226, 308, 572, 589
BstDEI	CTNAG	3 cut(s)	220, 327, 420
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstFNI	CGCG	2 cut(s)	306, 308
BstHHI	GCGC	2 cut(s)	308, 310
BstKTI	GATC	2 cut(s)	496, 654
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	2 cut(s)	493, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 71, 221, 347, 530
BstNI	CCWGG	2 cut(s)	563, 674
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	3 cut(s)	107, 561, 672
BstUI	CGCG	2 cut(s)	306, 308
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	7 cut(s)	32, 41, 246, 407, 533, 574, 667
BtgZI	GCGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	5 cut(s)	396, 483, 527, 620, 646
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	4 cut(s)	226, 308, 572, 589
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	308, 310
Cfr13I	GGNCC	4 cut(s)	30, 572, 614, 665
CseI	GACGC	1 cut(s)	736
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	6 cut(s)	248, 382, 428, 588, 592, 709
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	3 cut(s)	220, 327, 420
DpnI	GATC	2 cut(s)	495, 653
DpnII	GATC	2 cut(s)	493, 651
EaeI	YGGCCR	2 cut(s)	244, 531
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	561, 672
EcoT22I	ATGCAT	1 cut(s)	593
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	6 cut(s)	251, 385, 431, 591, 595, 712
FatI	CATG	6 cut(s)	247, 381, 427, 587, 591, 708
FauI	CCCGC	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	5, 154, 690
Fsp4HI	GCNGC	3 cut(s)	5, 154, 690
FspBI	CTAG	3 cut(s)	281, 440, 769
GlaI	GCGC	2 cut(s)	307, 309
GluI	GCNGC	3 cut(s)	5, 154, 690
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	7 cut(s)	32, 41, 246, 407, 533, 574, 667
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	736
HhaI	GCGC	2 cut(s)	308, 310
Hin1I	GRCGYC	1 cut(s)	728
Hin1II	CATG	6 cut(s)	251, 385, 431, 591, 595, 712
Hin6I	GCGC	2 cut(s)	306, 308
HinP1I	GCGC	2 cut(s)	306, 308
HincII	GTYRAC	2 cut(s)	253, 453
HindII	GTYRAC	2 cut(s)	253, 453
HinfI	GANTC	2 cut(s)	53, 540
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	3 cut(s)	253, 453, 469
Hpy188I	TCNGA	2 cut(s)	62, 169
Hpy188III	TCNNGA	1 cut(s)	758
Hpy8I	GTNNAC	3 cut(s)	253, 453, 469
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	107, 208, 277, 282
HpyCH4III	ACNGT	2 cut(s)	391, 475
HpyCH4IV	ACGT	2 cut(s)	234, 402
HpyCH4V	TGCA	4 cut(s)	191, 427, 591, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 71, 221, 347, 530
HpyF3I	CTNAG	3 cut(s)	220, 327, 420
HpySE526I	ACGT	2 cut(s)	234, 402
Hsp92I	GRCGYC	1 cut(s)	728
Hsp92II	CATG	6 cut(s)	251, 385, 431, 591, 595, 712
HspAI	GCGC	2 cut(s)	306, 308
Kzo9I	GATC	2 cut(s)	493, 651
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	338, 760
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	3 cut(s)	281, 440, 769
MaeII	ACGT	2 cut(s)	234, 402
MaeIII	GTNAC	2 cut(s)	262, 370
MalI	GATC	2 cut(s)	495, 653
MboI	GATC	2 cut(s)	493, 651
MboII	GAAGA	2 cut(s)	148, 269
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	277
MlsI	TGGCCA	2 cut(s)	246, 533
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	2 cut(s)	246, 533
MlyI	GAGTC	1 cut(s)	47
Mox20I	TGGCCA	2 cut(s)	246, 533
Mph1103I	ATGCAT	1 cut(s)	593
MscI	TGGCCA	2 cut(s)	246, 533
MseI	TTAA	2 cut(s)	231, 362
Msp20I	TGGCCA	2 cut(s)	246, 533
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	3 cut(s)	109, 563, 674
MvaI	CCWGG	2 cut(s)	563, 674
MvnI	CGCG	2 cut(s)	306, 308
MwoI	GCNNNNNNNGC	5 cut(s)	38, 71, 221, 347, 530
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	493, 651
NlaIII	CATG	6 cut(s)	251, 385, 431, 591, 595, 712
NlaIV	GGNNCC	3 cut(s)	517, 644, 756
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	591
PaeI	GCATGC	1 cut(s)	591
PauI	GCGCGC	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	540
PflMI	CCANNNNNTGG	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	6, 155, 691
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	561, 672
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	561, 672
PspN4I	GGNNCC	3 cut(s)	517, 644, 756
PspPI	GGNCC	4 cut(s)	30, 572, 614, 665
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	651
PteI	GCGCGC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	231, 362
SatI	GCNGC	3 cut(s)	5, 154, 690
Sau3AI	GATC	2 cut(s)	493, 651
Sau96I	GGNCC	4 cut(s)	30, 572, 614, 665
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	109, 563, 674
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	173
SfiI	GGCCNNNNNGGCC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	614
SphI	GCATGC	1 cut(s)	591
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	5, 153, 570, 689
SspMI	CTAG	3 cut(s)	281, 440, 769
StyD4I	CCNGG	3 cut(s)	107, 561, 672
TaaI	ACNGT	2 cut(s)	391, 475
TaiI	ACGT	2 cut(s)	237, 405
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	3 cut(s)	7, 156, 692
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	2 cut(s)	231, 362
Tru9I	TTAA	2 cut(s)	231, 362
TscAI	CASTG	5 cut(s)	396, 490, 534, 627, 653
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	3 cut(s)	82, 532, 608
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	5 cut(s)	396, 490, 534, 627, 653
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XspI	CTAG	3 cut(s)	281, 440, 769
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.