Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014168

Physical Location & Seq

Genomic Coordinates Forward (+)

27521944 .. 27523332

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCAACATCAGCTCGTAGAGCATACGGTTTCGGTAGAGCCGATGAGGCTACACACCCTGACTCCATTAGAGCAACTTTAGCTGAGTTTCTCTCCACTTTTGTCTTCGTCTTTGCAGCTGAAGGCTCTATCCTCTCTCTCGATAAGTTGTATTGGGAACATGCGGCTCATGCGGGGACAAACACACCAGGAGGGCTGATTTTAGTAGCGTTGGCTCATGCGTTTGCTCTGTTTGCTGCTGTTTCAGCAGCCATTAATGTCTCCGGCGGACACGTTAACCCGGCAGTCACTTTTGGTGCTCTTGTTGGAGGCAGAGTTACAGCGATCCGCGCCATCTACTACTGGATCGCTCAGCTTCTTGGAGCCATCCTCGCTTGTCTCTTGTTAAGGCTCACAACAAACGGCATGAGACCAGTTGGTTTCCGTCTAGCATCAGGTGTTGGAGCGGTTAATGGACTTGTATTAGAGATCATTTTAACATTTGGCTTAGTCTACGTAGTGTATTCCACTTTGATTGATCCAAAACGTGGAAGCCTCGGGATCATAGCACCGCTTGCAATCGGACTCATAGTTGGGGCAAACATCTTAGTAGGTGGACCATTTTCTGGTGCTTCGATGAATCCAGCTAGAGCTTTTGGTCCAGCGTTGGTGGGATGGAGATGGCATGACCACTGGATCTATTGGGTCGGACCATTCATCGGTAGTGCTTTAGCCGCCCTTATATATGAGTACATGGTCATACCCACCGAACCACCTACCCACCACGCACATGGTGTACACCAGCCCTTGGCCCCTGAAGATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006914 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009705 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0021700 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0061919 GO:0071695 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

268

Amino Acids

28.31

Weight (kDa)

7.2

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	17 - 242	7.1e-83	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17810 AT1G73190
fragaria_vesca	FvH4_5g18640
malus_domestica	MD06G1241500.v1.1
prunus_persica	Prupe.5G246100_v2.0.a1
pyrus_communis	pycom06g21660
rosa_chinensis	RchiOBHm_Chr7g0176871
rosa_laevigata	RLG00000005577
rosa_multiflora	Rmu_co8433363.1_g000001 Rmu_sc0002436.1_g000002 Rmu_sc0005310.1_g000053
rosa_rugosa	Rorug06G0401300
rosa_samantha	Rh7AG000700 Rh7BG001300 Rh7CG000700 Rh7DG001000
rosa_wichuraiana	Rw7G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	527, 605, 787
AccBSI	CCGCTC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	1 cut(s)	330
AciI	CCGC	7 cut(s)	164, 173, 267, 328, 446, 551, 714
AclWI	GGATC	5 cut(s)	319, 353, 512, 548, 683
AcuI	CTGAAG	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	731, 777
AfiI	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 787
AflIII	ACRYGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	6 cut(s)	14, 83, 119, 355, 626, 632
AluI	AGCT	6 cut(s)	14, 83, 119, 355, 626, 632
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	3 cut(s)	265, 383, 403
AlwI	GGATC	5 cut(s)	319, 353, 512, 548, 683
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	789
ApeKI	GCWGC	3 cut(s)	116, 236, 248
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	4 cut(s)	596, 638, 689, 790
AsuC2I	CCSGG	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	3 cut(s)	596, 638, 689
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	128, 223, 260
BccI	CCATC	4 cut(s)	341, 374, 648, 654
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	3 cut(s)	265, 383, 403
BfaI	CTAG	3 cut(s)	428, 627, 805
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	117, 165, 237, 249, 714
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	5 cut(s)	118, 166, 238, 250, 715
Bme1390I	CCNGG	2 cut(s)	189, 281
Bme18I	GGWCC	3 cut(s)	596, 638, 689
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	4 cut(s)	596, 638, 689, 790
BmiI	GGNNCC	2 cut(s)	364, 792
BmrFI	CCNGG	2 cut(s)	189, 281
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	4 cut(s)	77, 109, 354, 386
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	496
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	535, 786
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 300, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 787
Bse1I	ACTGG	3 cut(s)	347, 413, 677
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	535, 786
BseGI	GGATG	2 cut(s)	366, 659
BseLI	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 787
BseMII	CTCAG	2 cut(s)	75, 365
BseNI	ACTGG	3 cut(s)	347, 413, 677
BseXI	GCAGC	3 cut(s)	128, 223, 260
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	2 cut(s)	264, 281
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	527, 605, 698, 787
BsmAI	GTCTC	3 cut(s)	265, 383, 403
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	791
Bso31I	GGTCTC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	7 cut(s)	164, 173, 267, 328, 446, 551, 714
BspANI	GGCC	1 cut(s)	791
BspCNI	CTCAG	2 cut(s)	76, 364
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	364, 792
BspPI	GGATC	5 cut(s)	319, 353, 512, 548, 683
BspTNI	GGTCTC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	347, 413, 677
BssECI	CCNNGG	2 cut(s)	535, 786
BssMI	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	775
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	84, 351, 487, 586
BstF5I	GGATG	2 cut(s)	366, 659
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	6 cut(s)	327, 348, 471, 520, 543, 678
BstMAI	GTCTC	3 cut(s)	265, 383, 403
BstMBI	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	187, 279
BstSNI	TACGTA	1 cut(s)	496
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	128, 223, 260
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	791
BtsCI	GGATG	2 cut(s)	366, 659
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	4 cut(s)	596, 638, 689, 790
Csp6I	GTAC	2 cut(s)	730, 776
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	7 cut(s)	161, 170, 218, 406, 665, 733, 770
CviQI	GTAC	2 cut(s)	730, 776
DdeI	CTNAG	4 cut(s)	84, 351, 487, 586
DpnI	GATC	6 cut(s)	326, 347, 470, 519, 542, 677
DpnII	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
DraIII	CACNNNGTG	1 cut(s)	773
EciI	GGCGGA	1 cut(s)	282
Eco105I	TACGTA	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	3 cut(s)	596, 638, 689
Eco57I	CTGAAG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	7 cut(s)	164, 173, 221, 409, 668, 736, 773
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	7 cut(s)	160, 169, 217, 405, 664, 732, 769
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	5 cut(s)	117, 165, 237, 249, 714
FokI	GGATG	2 cut(s)	353, 666
Fsp4HI	GCNGC	5 cut(s)	117, 165, 237, 249, 714
FspBI	CTAG	3 cut(s)	428, 627, 805
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	5 cut(s)	117, 165, 237, 249, 714
HaeIII	GGCC	1 cut(s)	791
HapII	CCGG	2 cut(s)	264, 281
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	7 cut(s)	164, 173, 221, 409, 668, 736, 773
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	62, 564, 619
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	2 cut(s)	264, 281
Hpy166II	GTNNAC	5 cut(s)	277, 493, 596, 776, 778
Hpy188I	TCNGA	2 cut(s)	563, 689
Hpy188III	TCNNGA	2 cut(s)	140, 538
Hpy8I	GTNNAC	5 cut(s)	277, 493, 596, 776, 778
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	3 cut(s)	273, 495, 526
HpyCH4V	TGCA	2 cut(s)	116, 557
HpyF3I	CTNAG	4 cut(s)	84, 351, 487, 586
HpySE526I	ACGT	3 cut(s)	273, 495, 526
Hsp92II	CATG	7 cut(s)	164, 173, 221, 409, 668, 736, 773
HspAI	GCGC	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
LmnI	GCTCC	2 cut(s)	362, 443
Lsp1109I	GCAGC	3 cut(s)	128, 223, 260
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	3 cut(s)	428, 627, 805
MaeII	ACGT	3 cut(s)	273, 495, 526
MaeIII	GTNAC	2 cut(s)	286, 316
MalI	GATC	6 cut(s)	326, 347, 470, 519, 542, 677
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	56, 558
MmeI	TCCRAC	3 cut(s)	286, 421, 667
MnlI	CCTC	6 cut(s)	40, 143, 185, 302, 380, 545
MseI	TTAA	5 cut(s)	255, 276, 386, 450, 476
MslI	CAYNNNNRTG	1 cut(s)	768
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	2 cut(s)	264, 281
MspR9I	CCNGG	2 cut(s)	189, 281
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
NlaIII	CATG	7 cut(s)	164, 173, 221, 409, 668, 736, 773
NlaIV	GGNNCC	2 cut(s)	364, 792
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	619
PflMI	CCANNNNNTGG	3 cut(s)	527, 605, 787
PkrI	GCNGC	5 cut(s)	118, 166, 238, 250, 715
PleI	GAGTC	2 cut(s)	56, 558
PpsI	GAGTC	2 cut(s)	56, 558
Ppu21I	YACGTR	1 cut(s)	496
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	364, 792
PspPI	GGNCC	4 cut(s)	596, 638, 689, 790
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	731, 777
RsaNI	GTAC	2 cut(s)	730, 776
RseI	CAYNNNNRTG	1 cut(s)	768
SaqAI	TTAA	5 cut(s)	255, 276, 386, 450, 476
SatI	GCNGC	5 cut(s)	117, 165, 237, 249, 714
Sau3AI	GATC	6 cut(s)	324, 345, 468, 517, 540, 675
Sau96I	GGNCC	4 cut(s)	596, 638, 689, 790
SchI	GAGTC	2 cut(s)	56, 558
ScrFI	CCNGG	2 cut(s)	189, 281
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	440
SinI	GGWCC	3 cut(s)	596, 638, 689
SmiMI	CAYNNNNRTG	1 cut(s)	768
SnaBI	TACGTA	1 cut(s)	496
SsiI	CCGC	7 cut(s)	164, 173, 267, 328, 446, 551, 714
SspMI	CTAG	3 cut(s)	428, 627, 805
StyD4I	CCNGG	2 cut(s)	187, 279
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	3 cut(s)	276, 498, 529
TaqI	TCGA	2 cut(s)	141, 614
TatI	WGTACW	2 cut(s)	729, 775
TauI	GCSGC	2 cut(s)	167, 716
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	5 cut(s)	255, 276, 386, 450, 476
Tru9I	TTAA	5 cut(s)	255, 276, 386, 450, 476
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	3 cut(s)	116, 236, 248
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	632, 685
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	677
Van91I	CCANNNNNTGG	3 cut(s)	527, 605, 787
VpaK11BI	GGWCC	3 cut(s)	596, 638, 689
VspI	ATTAAT	1 cut(s)	255
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	3 cut(s)	428, 627, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.