Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014168

Physical Location & Seq

Genomic Coordinates Reverse (-)

74884 .. 75939

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCGCAGCCTGCTCGTAGATACGCGTTTGGGAGGGCCGACGAGGCTACCCACCCCGACTCCATCAGAGCTACTTTAGCTGAATTCATTGCCACTTTCATCTTTGTCTTTGCTGGGGAAGGCTCTATCCTCGCTCTTGGGAAAATTTACAAGGACAGCGACACATCAGTGTCTGAGCTGATAGCCATAGCTCTTGCACATGCATTCTCTCTCTTCTCAGCCATCTCAGCCAGCATTAACATCTCTGGTGGCCATGTCAACCCTGCAGTAACCTTTGGTGCTCTTCTCGGTGGAAGGATATCGGTTGTTCGCGCCTTTTACTACTGGGTCGCTCAGCTCCTTGGGGCTATTGTGGCTTCCCTTTTGCTAAGGCTTGTCACAAATGGCATGAGAACAGTGGGGTTCAACGTTGCCCCCGGTGTTGGCGAGTGGCATGGGCTAATACTAGAGATTGTGATGACATTTGGGTTAGTTTACACCGTATATGCTACAGCCATTGATCCCAAGAGGGGTGGCTTGGGAACTATAGCACCTCTGGCCATTGGATTCATTGTTGGCGCAAATATCCTGGTGGGTGGGCCGTTTGACGGGGCATCCATGAATCCGGCAAGGGCATTTGGACCAGCCCTGGTAGGGTGGAGATGGAGGAACCACTGGATCTACTGGGTTGGACCATTTATAGGTGGGGGGTTGGCAGCTCTCATGTACGAATACATGGTCATACCAACAGAGGCTCCCCACCACACACATCACCAGCCCTTGGCTCCCGAGGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006914 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009705 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0021700 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032586 GO:0034220 GO:0042044 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0061919 GO:0071695 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

259

Amino Acids

27.7

Weight (kDa)

6.75

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 236	7e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17810 AT1G73190
fragaria_vesca	FvH4_5g18640
malus_domestica	MD06G1241500.v1.1
prunus_persica	Prupe.5G246100_v2.0.a1
pyrus_communis	pycom06g21660
rosa_chinensis	RchiOBHm_Chr7g0176871
rosa_laevigata	RLG00000005577
rosa_multiflora	Rmu_co8433363.1_g000001 Rmu_sc0002436.1_g000002 Rmu_sc0005310.1_g000053
rosa_rugosa	Rorug06G0401300
rosa_samantha	Rh7AG000700 Rh7BG001300 Rh7CG000700 Rh7DG001000
rosa_wichuraiana	Rw7G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccII	CGCG	2 cut(s)	26, 312
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	2 cut(s)	494, 665
AcoI	YGGCCR	2 cut(s)	250, 537
AcsI	RAATTY	2 cut(s)	83, 144
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 633, 680, 760
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	567, 627
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	71, 80, 178, 191, 337, 698
AluI	AGCT	6 cut(s)	71, 80, 178, 191, 337, 698
Alw21I	GWGCWC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	494, 665
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	4 cut(s)	36, 250, 537, 578
ApeKI	GCWGC	2 cut(s)	7, 695
ApoI	RAATTY	2 cut(s)	83, 144
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
AspLEI	GCGC	2 cut(s)	314, 560
AspS9I	GGNCC	4 cut(s)	36, 578, 620, 671
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	2 cut(s)	620, 671
BalI	TGGCCA	2 cut(s)	252, 539
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	19, 707
BccI	CCATC	3 cut(s)	71, 230, 636
BceAI	ACGGC	1 cut(s)	565
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	569, 629
BcnI	CCSGG	1 cut(s)	417
BfaI	CTAG	2 cut(s)	446, 778
BfmI	CTRYAG	3 cut(s)	264, 489, 525
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	5, 8, 696
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	3 cut(s)	6, 9, 697
Bme1390I	CCNGG	3 cut(s)	417, 569, 629
Bme18I	GGWCC	2 cut(s)	620, 671
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	4 cut(s)	36, 578, 620, 671
BmiI	GGNNCC	3 cut(s)	650, 735, 765
BmrFI	CCNGG	3 cut(s)	417, 569, 629
BmrI	ACTGGG	2 cut(s)	334, 673
BmsI	GCATC	1 cut(s)	602
BmuI	ACTGGG	2 cut(s)	334, 673
Bpu10I	CCTNAGC	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	417
BsaJI	CCNNGG	5 cut(s)	340, 415, 627, 759, 768
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 718, 748
Bsc4I	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 633, 680, 760
Bse1I	ACTGG	3 cut(s)	329, 659, 668
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	569, 629
BseDI	CCNNGG	5 cut(s)	340, 415, 627, 759, 768
BseGI	GGATG	1 cut(s)	593
BseLI	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 633, 680, 760
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	4 cut(s)	165, 231, 240, 347
BseNI	ACTGG	3 cut(s)	329, 659, 668
BseXI	GCAGC	2 cut(s)	19, 707
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	26, 312
BshFI	GGCC	4 cut(s)	38, 252, 539, 580
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	2 cut(s)	417, 605
BslI	CCNNNNNNNGG	6 cut(s)	422, 509, 587, 633, 680, 760
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	4 cut(s)	38, 252, 539, 580
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	499, 657
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	4 cut(s)	38, 252, 539, 580
BspCNI	CTCAG	4 cut(s)	166, 230, 239, 346
BspFNI	CGCG	2 cut(s)	26, 312
BspLI	GGNNCC	3 cut(s)	650, 735, 765
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	2 cut(s)	494, 665
BspQI	GCTCTTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	329, 659, 668
BssECI	CCNNGG	5 cut(s)	340, 415, 627, 759, 768
BssMI	GATC	2 cut(s)	499, 657
BssT1I	CCWWGG	2 cut(s)	340, 759
Bst2UI	CCWGG	2 cut(s)	569, 629
Bst4CI	ACNGT	2 cut(s)	397, 481
Bst6I	CTCTTC	2 cut(s)	218, 288
BstC8I	GCNNGC	2 cut(s)	12, 232
BstDEI	CTNAG	5 cut(s)	174, 217, 226, 333, 368
BstF5I	GGATG	1 cut(s)	593
BstFNI	CGCG	2 cut(s)	26, 312
BstHHI	GCGC	2 cut(s)	314, 560
BstKTI	GATC	2 cut(s)	502, 660
BstMBI	GATC	2 cut(s)	499, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 77, 227, 353, 536
BstNI	CCWGG	2 cut(s)	569, 629
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	415, 567, 627
BstSFI	CTRYAG	3 cut(s)	264, 489, 525
BstUI	CGCG	2 cut(s)	26, 312
BstV1I	GCAGC	2 cut(s)	19, 707
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	38, 252, 539, 580
BtsCI	GGATG	1 cut(s)	593
BtsIMutI	CAGTG	3 cut(s)	174, 402, 652
Cac8I	GCNNGC	2 cut(s)	12, 232
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	314, 560
Cfr13I	GGNCC	4 cut(s)	36, 578, 620, 671
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	7 cut(s)	200, 254, 388, 434, 598, 703, 715
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	5 cut(s)	174, 217, 226, 333, 368
DpnI	GATC	2 cut(s)	501, 659
DpnII	GATC	2 cut(s)	499, 657
EaeI	YGGCCR	2 cut(s)	250, 537
Eam1104I	CTCTTC	2 cut(s)	218, 288
EarI	CTCTTC	2 cut(s)	218, 288
Eco130I	CCWWGG	2 cut(s)	340, 759
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	620, 671
Eco88I	CYCGRG	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	567, 627
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	340, 759
EcoT22I	ATGCAT	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	340, 759
FaeI	CATG	7 cut(s)	203, 257, 391, 437, 601, 706, 718
FatI	CATG	7 cut(s)	199, 253, 387, 433, 597, 702, 714
Fnu4HI	GCNGC	3 cut(s)	5, 8, 696
FokI	GGATG	1 cut(s)	580
Fsp4HI	GCNGC	3 cut(s)	5, 8, 696
FspBI	CTAG	2 cut(s)	446, 778
GlaI	GCGC	2 cut(s)	313, 559
GluI	GCNGC	3 cut(s)	5, 8, 696
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	38, 252, 539, 580
HapII	CCGG	2 cut(s)	417, 605
HhaI	GCGC	2 cut(s)	314, 560
Hin1II	CATG	7 cut(s)	203, 257, 391, 437, 601, 706, 718
Hin6I	GCGC	2 cut(s)	312, 558
HinP1I	GCGC	2 cut(s)	312, 558
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	59, 546, 601
HpaII	CCGG	2 cut(s)	417, 605
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	2 cut(s)	259, 475
Hpy188I	TCNGA	2 cut(s)	68, 175
Hpy188III	TCNNGA	1 cut(s)	767
Hpy8I	GTNNAC	2 cut(s)	259, 475
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	113, 288
HpyCH4III	ACNGT	2 cut(s)	397, 481
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	197, 203, 266
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 77, 227, 353, 536
HpyF3I	CTNAG	5 cut(s)	174, 217, 226, 333, 368
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	7 cut(s)	203, 257, 391, 437, 601, 706, 718
HspAI	GCGC	2 cut(s)	312, 558
Kzo9I	GATC	2 cut(s)	499, 657
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	3 cut(s)	342, 739, 769
Lsp1109I	GCAGC	2 cut(s)	19, 707
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	2 cut(s)	446, 778
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	268, 376
MalI	GATC	2 cut(s)	501, 659
MboI	GATC	2 cut(s)	499, 657
MboII	GAAGA	2 cut(s)	205, 275
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	2 cut(s)	252, 539
MluCI	AATT	2 cut(s)	83, 144
MluI	ACGCGT	1 cut(s)	24
MluNI	TGGCCA	2 cut(s)	252, 539
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	8 cut(s)	27, 37, 140, 501, 543, 639, 724, 763
Mox20I	TGGCCA	2 cut(s)	252, 539
Mph1103I	ATGCAT	1 cut(s)	205
MscI	TGGCCA	2 cut(s)	252, 539
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	2 cut(s)	252, 539
MspI	CCGG	2 cut(s)	417, 605
MspR9I	CCNGG	3 cut(s)	417, 569, 629
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	569, 629
MvnI	CGCG	2 cut(s)	26, 312
MwoI	GCNNNNNNNGC	5 cut(s)	44, 77, 227, 353, 536
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	2 cut(s)	499, 657
NlaIII	CATG	7 cut(s)	203, 257, 391, 437, 601, 706, 718
NlaIV	GGNNCC	3 cut(s)	650, 735, 765
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	546, 601
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	3 cut(s)	6, 9, 697
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	567, 627
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	567, 627
PspN4I	GGNNCC	3 cut(s)	650, 735, 765
PspPI	GGNCC	4 cut(s)	36, 578, 620, 671
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	657
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	5, 8, 696
Sau3AI	GATC	2 cut(s)	499, 657
Sau96I	GGNCC	4 cut(s)	36, 578, 620, 671
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	3 cut(s)	417, 569, 629
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	3 cut(s)	264, 489, 525
SinI	GGWCC	2 cut(s)	620, 671
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	83, 144
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	446, 778
StyD4I	CCNGG	3 cut(s)	415, 567, 627
StyI	CCWWGG	2 cut(s)	340, 759
TaaI	ACNGT	2 cut(s)	397, 481
TaiI	ACGT	1 cut(s)	411
TasI	AATT	2 cut(s)	83, 144
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	546, 601
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	174, 402, 659
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	7, 695
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	76, 88, 538, 614
TspRI	CASTG	3 cut(s)	174, 402, 659
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	2 cut(s)	620, 671
XapI	RAATTY	2 cut(s)	83, 144
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	2 cut(s)	446, 778
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.