AT1G18265

Zein-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018278
Physical Location & Seq
Reverse (-)
6282233 .. 6283348
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18265.1

Sequence Viewer

Length: 843 bp
ATGGATGTATACTTCTTTGTAATGGAGATTACTTCATTTCTGAAGCTTTTGAGTCAAACTGATGGTTTTGGATTTGGGATCTTCGTTATTGGTTGCTCCTCTCAGTTTTTCAATCTCGTCTTTCTCTGTTGTTTGCTTCTTTTGGGACTAAAGTTTCTATCTTTCAAAGGTACTTCATTGTTTTTGCAGTATTTAGAGAAGATCAATCGAATTTCTCCGAACATTGAGTTTTTCAATTCCTTCAATCGAGAACACAAGGATTGCAACAACAACAACAACAACAACAACAACAACAATGGGTTCATTTCAAAATCTCATTTGGCTGATGGATTGGATCAGAAGAAACCAATCATTTTACACTGGAGTTCTGATTCTACTAATAGATTGAGCTGGGAGAACTGTGATCTTCTCCTTCTACGTGATGGGCTTGATCACATCCAGAACAGAGAAAATACCGTGGCGTTATCGGAGACAGAGCTCGACGAGAAGAATCATCATGGCGAAGAAGAGGAAAGCGAGGACGAAGAAGAATCACAGTCTCAGAATGATGAAGACCAATTGTTAGACGTTATTACTCTGAGAACAATGGTGAAGAGAGAGAGAAAACGTGGAGATTACATGAAGAAAGAGCTGGAGAAGGAGAGAAGAGCAGCTGAATCAGCTGCTGAAGAAGCCATGGCTATGCTTCTGAAGCTACGGATGGAGAAAAGCGTTGTGGAGATGGAGACAAAACAATACAAGAGAGTCGCCGAACAGAAGCAAGTGTACGATCAAGAAGTGATTCAATCATTACAGTGGATGTTGATGAAGCTTGATGATGACGAAGACAAGATTCAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zein-binding

Protein Analysis

280

Amino Acids

32.81

Weight (kDa)

4.86

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zein-binding PF04576 192 - 278 1.6e-27 Zein-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18265
fragaria_vesca FvH4_2g11370
malus_domestica MD10G1055500.v1.1
prunus_persica Prupe.8G073500_v2.0.a1
pyrus_communis pycom10g04250
rosa_chinensis RchiOBHm_Chr6g0270031
rosa_roxburghii Rroxscaffold_7G00198190
rosa_rugosa Rorug06G0052000
rosa_samantha Rh6AG171100
rosa_wichuraiana Rw6G014710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AclWI GGATC 2 cut(s) 86, 342
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 3 cut(s) 62, 687, 710
AfaI GTAC 2 cut(s) 172, 767
AgsI TTSAA 7 cut(s) 112, 166, 235, 244, 309, 785, 836
AluBI AGCT 8 cut(s) 46, 390, 478, 631, 653, 662, 694, 811
AluI AGCT 8 cut(s) 46, 390, 478, 631, 653, 662, 694, 811
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 3 cut(s) 464, 543, 719
AlwI GGATC 2 cut(s) 86, 342
AlwNI CAGNNNCTG 1 cut(s) 665
ApeKI GCWGC 2 cut(s) 650, 662
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 780
AsuHPI GGTGA 1 cut(s) 601
BanII GRGCYC 1 cut(s) 480
BarI GAAGNNNNNNTAC 2 cut(s) 749, 781
BbsI GAAGAC 2 cut(s) 558, 831
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 649, 662
BccI CCATC 5 cut(s) 56, 320, 416, 694, 715
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 464, 543, 719
BisI GCNGC 2 cut(s) 651, 663
BlsI GCNGC 2 cut(s) 652, 664
BpiI GAAGAC 2 cut(s) 558, 831
BpmI CTGGAG 2 cut(s) 382, 653
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 456, 675
Bse1I ACTGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 456, 675
BseGI GGATG 4 cut(s) 10, 435, 705, 804
BseMII CTCAG 3 cut(s) 116, 554, 569
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 649, 662
BseYI CCCAGC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 480
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 464, 543, 719
BsmFI GGGAC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 6 cut(s) 78, 201, 334, 403, 430, 769
Bsp19I CCATGG 1 cut(s) 675
BspCNI CTCAG 3 cut(s) 115, 553, 570
BspPI GGATC 2 cut(s) 86, 342
BspQI GCTCTTC 1 cut(s) 640
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 456, 675
BssMI GATC 6 cut(s) 78, 201, 334, 403, 430, 769
BssNAI GTATAC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 675
Bst1107I GTATAC 1 cut(s) 10
Bst4CI ACNGT 4 cut(s) 401, 457, 537, 795
Bst6I CTCTTC 3 cut(s) 501, 587, 640
BstBAI YACGTR 1 cut(s) 419
BstDEI CTNAG 3 cut(s) 102, 540, 578
BstDSI CCRYGG 2 cut(s) 456, 675
BstF5I GGATG 4 cut(s) 10, 435, 705, 804
BstKTI GATC 6 cut(s) 81, 204, 337, 406, 433, 772
BstMAI GTCTC 3 cut(s) 464, 543, 719
BstMBI GATC 6 cut(s) 78, 201, 334, 403, 430, 769
BstMWI GCNNNNNNNGC 3 cut(s) 659, 671, 691
BstV1I GCAGC 2 cut(s) 649, 662
BstV2I GAAGAC 2 cut(s) 558, 831
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BstZ17I GTATAC 1 cut(s) 10
BtgI CCRYGG 2 cut(s) 456, 675
BtsCI GGATG 4 cut(s) 10, 435, 705, 804
BtsIMutI CAGTG 2 cut(s) 358, 800
CaiI CAGNNNCTG 1 cut(s) 665
Csp6I GTAC 2 cut(s) 171, 766
CviAII CATG 3 cut(s) 497, 619, 676
CviQI GTAC 2 cut(s) 171, 766
DdeI CTNAG 3 cut(s) 102, 540, 578
DpnI GATC 6 cut(s) 80, 203, 336, 405, 432, 771
DpnII GATC 6 cut(s) 78, 201, 334, 403, 430, 769
Eam1104I CTCTTC 3 cut(s) 501, 587, 640
EarI CTCTTC 3 cut(s) 501, 587, 640
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 480
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 3 cut(s) 62, 687, 710
EcoICRI GAGCTC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 3 cut(s) 500, 622, 679
FaiI YATR 5 cut(s) 10, 498, 620, 677, 683
FaqI GGGAC 1 cut(s) 159
FatI CATG 3 cut(s) 496, 618, 675
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 651, 663
FokI GGATG 4 cut(s) 17, 422, 712, 811
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 651, 663
GluI GCNGC 2 cut(s) 651, 663
GsaI CCCAGC 1 cut(s) 394
GsuI CTGGAG 2 cut(s) 382, 653
Hin1II CATG 3 cut(s) 500, 622, 679
HindIII AAGCTT 2 cut(s) 44, 809
HinfI GANTC 8 cut(s) 52, 371, 490, 530, 656, 744, 781, 832
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 2 cut(s) 10, 766
Hpy188I TCNGA 8 cut(s) 42, 219, 339, 370, 469, 543, 579, 690
Hpy188III TCNNGA 3 cut(s) 248, 439, 773
Hpy8I GTNNAC 2 cut(s) 10, 766
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 3 cut(s) 250, 422, 631
HpyCH4III ACNGT 4 cut(s) 401, 457, 537, 795
HpyCH4IV ACGT 3 cut(s) 418, 567, 607
HpyCH4V TGCA 2 cut(s) 187, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 659, 671, 691
HpyF3I CTNAG 3 cut(s) 102, 540, 578
HpySE526I ACGT 3 cut(s) 418, 567, 607
Hsp92II CATG 3 cut(s) 500, 622, 679
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 6 cut(s) 78, 201, 334, 403, 430, 769
LguI GCTCTTC 1 cut(s) 640
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 4 cut(s) 346, 376, 452, 617
Lsp1109I GCAGC 2 cut(s) 649, 662
MaeII ACGT 3 cut(s) 418, 567, 607
MalI GATC 6 cut(s) 80, 203, 336, 405, 432, 771
MboI GATC 6 cut(s) 78, 201, 334, 403, 430, 769
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 3 cut(s) 210, 235, 557
MlyI GAGTC 2 cut(s) 61, 753
MnlI CCTC 3 cut(s) 109, 502, 511
MroXI GAANNNNTTC 1 cut(s) 780
MslI CAYNNNNRTG 2 cut(s) 680, 793
MspA1I CMGCKG 2 cut(s) 653, 662
MunI CAATTG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 659, 671, 691
NcoI CCATGG 1 cut(s) 675
NdeII GATC 6 cut(s) 78, 201, 334, 403, 430, 769
NlaIII CATG 3 cut(s) 500, 622, 679
PciSI GCTCTTC 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 6 cut(s) 371, 490, 530, 656, 781, 832
PkrI GCNGC 2 cut(s) 652, 664
PleI GAGTC 2 cut(s) 60, 752
PpsI GAGTC 2 cut(s) 60, 752
Ppu21I YACGTR 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 2 cut(s) 653, 662
RsaI GTAC 2 cut(s) 172, 767
RsaNI GTAC 2 cut(s) 171, 766
RseI CAYNNNNRTG 2 cut(s) 680, 793
SacI GAGCTC 1 cut(s) 480
SapI GCTCTTC 1 cut(s) 640
SatI GCNGC 2 cut(s) 651, 663
Sau3AI GATC 6 cut(s) 78, 201, 334, 403, 430, 769
SchI GAGTC 2 cut(s) 61, 753
SduI GDGCHC 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 680, 793
Sse9I AATT 3 cut(s) 210, 235, 557
SstI GAGCTC 1 cut(s) 480
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 4 cut(s) 401, 457, 537, 795
TaiI ACGT 3 cut(s) 421, 570, 610
TaqI TCGA 3 cut(s) 208, 247, 480
TasI AATT 3 cut(s) 210, 235, 557
TfiI GAWTC 6 cut(s) 371, 490, 530, 656, 781, 832
TscAI CASTG 2 cut(s) 365, 800
TseI GCWGC 2 cut(s) 650, 662
TspDTI ATGAA 6 cut(s) 24, 165, 292, 564, 635, 821
TspGWI ACGGA 1 cut(s) 712
TspRI CASTG 2 cut(s) 365, 800
XapI RAATTY 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.