Prupe.8G073500_v2.0.a1

Zein-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0018278
Physical Location & Seq
Reverse (-)
10720725 .. 10721597
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G073500.1

Sequence Viewer

Length: 873 bp
ATGGAGTGTGCTTCATGTATCAAGCTTTTGAGTCAGGGGAGTGATTTTGGATGTGGGTTTTTTATGTTTGGCCGTTTCTCACTAGTTTTCAAGCTGTTGGGGCTGTTCTTGGTGTTTGTGTTGGGGTTAAAGGTTTTGCAAGTTGGCTGTCATGCCAAGTGTTTGATAGAATTTTTATGTGATTTTAGAGGGAAAGCAAGTGAAGTGAGAAATGGGTTTTGTTCAAAACGTGGTTTTGATGAAGTTTATGCTCCAAAATCGTTGGAGAATTCACAACCACTGAATGCAGATGGCTTCGCCTTCAGCAAAAAAATCAAGGCCAAAGCTGCTGCAGAAGATGAAGCTGATGATGTTGATGATGATGCTGCTGCTGCTGATGATGATGATGATGGTGATAAGGAGGAAAGTATTTGTTGCAATGAGGACGGAGAATTTGATGCTTTGGCATTGAGAAAATCAGTAAAGATCGAGCGGCGAAAAACAAACAAGGCTCGTGTCGAGCTCGAGAAGGAAAGGATGGCAGCAGCATCTGCAGCTGAGGAAACAATGGCCATGATCTTGCGTCTTCAAAATGAGAAAAGCTGTATTGAAATCCAAGCCAATCAGTACCGTCGGATGGCTGAACAGAAGCAGCAGTTTGATGAAGAAGTGATTCAATCGTTACAGTGGATTATAATGAGGCACGAATCCGAGAGGAGTCTATTGCAAGAGCAACTGACGCTGTGCAAACAAAAGCTGCAACAATATGCTGAGGTTGACGAAAGGCGTCAACCCGAAGATGGCAATCCAAGTGCAAACGATGGCATGGATGACATGTTTGACGTCGATTCATGGGAGAGACCACAAAACCACATTGTAGATTCGAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zein-binding

Protein Analysis

291

Amino Acids

32.85

Weight (kDa)

4.71

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18265
fragaria_vesca FvH4_2g11370
malus_domestica MD10G1055500.v1.1
prunus_persica Prupe.8G073500_v2.0.a1
pyrus_communis pycom10g04250
rosa_chinensis RchiOBHm_Chr6g0270031
rosa_roxburghii Rroxscaffold_7G00198190
rosa_rugosa Rorug06G0052000
rosa_samantha Rh6AG171100
rosa_wichuraiana Rw6G014710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 674
AatII GACGTC 1 cut(s) 825
AccBSI CCGCTC 1 cut(s) 472
AciI CCGC 1 cut(s) 472
AcoI YGGCCR 2 cut(s) 70, 549
AcsI RAATTY 3 cut(s) 170, 268, 431
AcuI CTGAAG 1 cut(s) 286
AcyI GRCGYC 2 cut(s) 766, 822
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 2 cut(s) 616, 779
AflIII ACRYGT 1 cut(s) 813
AgsI TTSAA 5 cut(s) 91, 225, 569, 590, 656
AhlI ACTAGT 1 cut(s) 82
AluBI AGCT 8 cut(s) 25, 94, 326, 344, 502, 536, 582, 736
AluI AGCT 8 cut(s) 25, 94, 326, 344, 502, 536, 582, 736
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 832
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 3 cut(s) 70, 318, 549
ApoI RAATTY 3 cut(s) 170, 268, 431
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 863
AvaI CYCGRG 1 cut(s) 503
BalI TGGCCA 1 cut(s) 551
BanII GRGCYC 1 cut(s) 504
BauI CACGAG 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 504
BbvCI CCTCAGC 2 cut(s) 537, 750
BccI CCATC 6 cut(s) 284, 383, 511, 610, 773, 794
BceAI ACGGC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 832
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 2 cut(s) 330, 531
BmeT110I CYCGRG 1 cut(s) 503
BmsI GCATC 3 cut(s) 352, 427, 536
BpiI GAAGAC 1 cut(s) 557
Bpu10I CCTNAGC 2 cut(s) 537, 750
Bpu14I TTCGAA 1 cut(s) 863
BsaBI GATNNNNATC 2 cut(s) 783, 864
BsaHI GRCGYC 2 cut(s) 766, 822
BsaI GGTCTC 1 cut(s) 832
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 779
Bse3DI GCAATG 1 cut(s) 424
Bse8I GATNNNNATC 2 cut(s) 783, 864
BseGI GGATG 4 cut(s) 56, 522, 621, 814
BseJI GATNNNNATC 2 cut(s) 783, 864
BseLI CCNNNNNNNGG 2 cut(s) 616, 779
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 528, 741
BseRI GAGGAG 1 cut(s) 709
BshFI GGCC 3 cut(s) 72, 320, 551
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 616, 779
BsmAI GTCTC 1 cut(s) 832
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 3 cut(s) 72, 320, 551
Bso31I GGTCTC 1 cut(s) 832
BsoBI CYCGRG 1 cut(s) 503
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 465, 555
BspACI CCGC 1 cut(s) 472
BspANI GGCC 3 cut(s) 72, 320, 551
BspCNI CTCAG 2 cut(s) 529, 742
BspMAI CTGCAG 2 cut(s) 334, 535
BspT104I TTCGAA 1 cut(s) 863
BspTNI GGTCTC 1 cut(s) 832
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 424
BssMI GATC 2 cut(s) 465, 555
BssNI GRCGYC 2 cut(s) 766, 822
BssSI CACGAG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 611, 666
BstACI GRCGYC 2 cut(s) 766, 822
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 863
BstDEI CTNAG 2 cut(s) 537, 750
BstF5I GGATG 4 cut(s) 56, 522, 621, 814
BstKTI GATC 2 cut(s) 468, 558
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 2 cut(s) 465, 555
BstMWI GCNNNNNNNGC 6 cut(s) 100, 326, 371, 530, 533, 718
BstNSI RCATGY 1 cut(s) 817
BstSFI CTRYAG 2 cut(s) 330, 531
BstV2I GAAGAC 1 cut(s) 557
BsuRI GGCC 3 cut(s) 72, 320, 551
BtsCI GGATG 4 cut(s) 56, 522, 621, 814
BtsIMutI CAGTG 2 cut(s) 278, 671
CaiI CAGNNNCTG 1 cut(s) 530
CseI GACGC 3 cut(s) 551, 727, 755
Csp6I GTAC 1 cut(s) 607
CviAII CATG 6 cut(s) 15, 152, 553, 805, 814, 831
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 2 cut(s) 537, 750
DpnI GATC 2 cut(s) 467, 557
DpnII GATC 2 cut(s) 465, 555
EaeI YGGCCR 2 cut(s) 70, 549
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 832
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 6 cut(s) 18, 155, 556, 808, 817, 834
FatI CATG 6 cut(s) 14, 151, 552, 804, 813, 830
FokI GGATG 4 cut(s) 63, 529, 628, 821
FriOI GRGCYC 1 cut(s) 504
FspBI CTAG 1 cut(s) 83
HaeIII GGCC 3 cut(s) 72, 320, 551
HgaI GACGC 3 cut(s) 551, 727, 755
Hin1I GRCGYC 2 cut(s) 766, 822
Hin1II CATG 6 cut(s) 18, 155, 556, 808, 817, 834
HincII GTYRAC 2 cut(s) 757, 770
HindII GTYRAC 2 cut(s) 757, 770
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 7 cut(s) 31, 652, 686, 697, 827, 860, 865
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 757, 770
Hpy188I TCNGA 2 cut(s) 615, 691
Hpy188III TCNNGA 1 cut(s) 505
Hpy8I GTNNAC 2 cut(s) 757, 770
Hpy99I CGWCG 2 cut(s) 615, 827
HpyAV CCTTC 2 cut(s) 310, 502
HpyCH4III ACNGT 2 cut(s) 611, 666
HpyCH4IV ACGT 2 cut(s) 229, 822
HpyCH4V TGCA 9 cut(s) 139, 287, 332, 417, 533, 706, 726, 739, 794
HpyF10VI GCNNNNNNNGC 6 cut(s) 100, 326, 371, 530, 533, 718
HpyF3I CTNAG 2 cut(s) 537, 750
HpySE526I ACGT 2 cut(s) 229, 822
Hsp92I GRCGYC 2 cut(s) 766, 822
Hsp92II CATG 6 cut(s) 18, 155, 556, 808, 817, 834
Kzo9I GATC 2 cut(s) 465, 555
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 1 cut(s) 20
LweI GCATC 3 cut(s) 352, 427, 536
MaeI CTAG 1 cut(s) 83
MaeII ACGT 2 cut(s) 229, 822
MaeIII GTNAC 1 cut(s) 660
MalI GATC 2 cut(s) 467, 557
MbiI CCGCTC 1 cut(s) 472
MboI GATC 2 cut(s) 465, 555
MboII GAAGA 4 cut(s) 347, 557, 656, 788
MhlI GDGCHC 1 cut(s) 504
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 3 cut(s) 170, 268, 431
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 40, 706
MmeI TCCRAC 2 cut(s) 243, 593
MnlI CCTC 7 cut(s) 182, 394, 415, 532, 672, 687, 745
Mox20I TGGCCA 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 551
MseI TTAA 2 cut(s) 128, 871
Msp20I TGGCCA 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 536
Mva1269I GAATGC 1 cut(s) 289
MwoI GCNNNNNNNGC 6 cut(s) 100, 326, 371, 530, 533, 718
NdeII GATC 2 cut(s) 465, 555
NlaIII CATG 6 cut(s) 18, 155, 556, 808, 817, 834
NspI RCATGY 1 cut(s) 817
NspV TTCGAA 1 cut(s) 863
PaeR7I CTCGAG 1 cut(s) 503
PciI ACATGT 1 cut(s) 813
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 5 cut(s) 652, 686, 827, 860, 865
PleI GAGTC 2 cut(s) 39, 705
PpsI GAGTC 2 cut(s) 39, 705
PscI ACATGT 1 cut(s) 813
PsiI TTATAA 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 504
PstI CTGCAG 2 cut(s) 334, 535
PstNI CAGNNNCTG 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 128, 871
Sau3AI GATC 2 cut(s) 465, 555
SchI GAGTC 2 cut(s) 40, 706
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 3 cut(s) 352, 427, 536
SfcI CTRYAG 2 cut(s) 330, 531
Sfr274I CTCGAG 1 cut(s) 503
SfuI TTCGAA 1 cut(s) 863
SlaI CTCGAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SpeI ACTAGT 1 cut(s) 82
Sse9I AATT 3 cut(s) 170, 268, 431
SsiI CCGC 1 cut(s) 472
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 504
TaaI ACNGT 2 cut(s) 611, 666
TaiI ACGT 2 cut(s) 232, 825
TaqI TCGA 5 cut(s) 468, 498, 504, 825, 863
TasI AATT 3 cut(s) 170, 268, 431
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 5 cut(s) 652, 686, 827, 860, 865
Tru1I TTAA 2 cut(s) 128, 871
Tru9I TTAA 2 cut(s) 128, 871
TscAI CASTG 2 cut(s) 285, 671
TspDTI ATGAA 4 cut(s) 255, 354, 657, 819
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 2 cut(s) 285, 671
XapI RAATTY 3 cut(s) 170, 268, 431
XceI RCATGY 1 cut(s) 817
XhoI CTCGAG 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 1 cut(s) 83
ZraI GACGTC 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.