AT1G18290

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015326
Physical Location & Seq
Forward (+)
6297219 .. 6298328
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18290.1

Sequence Viewer

Length: 531 bp
ATGGGAAACACATCTTCATGCGCACCATTGATCATATCAACAAACTCATCCTCAGGAGTGGTTAAAATCTTGGCTCCATTCACCGGAACTCTTGAAGTTTTCTCAAAACCCATCAAAACCTCCGACATCGTCTCTAGACACTCCGGCCACTTTATTACCGACTCAACTTTACTCCAAATCAGCCACCGAGTCACCGCCGTGTCTCCCGACGAATATTTACGGCCGAGACGACATCTCTACCTCCTCCTCCCGACCGACATGCTCTTCTCTGTCTTAACACAAGAAGAACTTTCTCTCATCTCCAACAAAGCCGCGGAGACACTCAACAAAAGCCGGTATAACCATTTGAAGAGAATATTCCCGGTCTGCATATTTCCGATGACCGGAGACAGAAGAAGAAACCCATCATCAGTTAATGAAGATCGAGCTCATGATGGTGTGGAAATAAGAGAAACCCTAGATGAGAAGGTACTATACGAATCAAAACATGGATCTTGGAGGCCTAAATTGGAGACGATCGTGGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

176

Amino Acids

19.83

Weight (kDa)

8.59

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 175 2.1e-30 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18290
fragaria_vesca FvH4_5g17470
malus_domestica MD06G1228100.v1.1 MD14G1237300.v1.1
prunus_persica Prupe.5G234600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178221
rosa_laevigata RLG00000005462
rosa_multiflora Rmu_co8411017.1_g000001 Rmu_sc0007855.1_g000004
rosa_roxburghii Rroxscaffold_3G00275070
rosa_rugosa Rorug06G0415100
rosa_samantha Rh7AG014200 Rh7BG013700 Rh7CG013600 Rh7DG013900
rosa_wichuraiana Rw7G001110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 22
AccII CGCG 1 cut(s) 314
AciI CCGC 3 cut(s) 195, 312, 314
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 2 cut(s) 145, 221
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 83, 383
AgsI TTSAA 2 cut(s) 95, 349
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 2 cut(s) 428, 528
AluI AGCT 2 cut(s) 428, 528
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 6 cut(s) 136, 207, 220, 311, 381, 506
AlwI GGATC 1 cut(s) 499
AoxI GGCC 3 cut(s) 145, 221, 500
AspLEI GCGC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 73, 184
AxyI CCTNAGG 1 cut(s) 52
BanII GRGCYC 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
Bbv12I GWGCWC 1 cut(s) 430
BccI CCATC 3 cut(s) 119, 412, 428
BceAI ACGGC 2 cut(s) 182, 236
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BclI TGATCA 1 cut(s) 30
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 6 cut(s) 136, 207, 220, 311, 381, 506
BfaI CTAG 2 cut(s) 135, 458
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 83, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 383
Bse118I RCCGGY 1 cut(s) 333
Bse21I CCTNAGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 83, 383
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 233, 236
BseX3I CGGCCG 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 314
Bsh1285I CGRYCG 3 cut(s) 224, 255, 519
BshFI GGCC 3 cut(s) 147, 223, 502
BsiEI CGRYCG 3 cut(s) 224, 255, 519
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 5 cut(s) 84, 144, 334, 362, 384
BslI CCNNNNNNNGG 2 cut(s) 83, 383
BsmAI GTCTC 6 cut(s) 136, 207, 220, 311, 381, 506
BsmBI CGTCTC 3 cut(s) 136, 220, 506
BsnI GGCC 3 cut(s) 147, 223, 502
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 4 cut(s) 30, 421, 491, 516
BspACI CCGC 3 cut(s) 195, 312, 314
BspANI GGCC 3 cut(s) 147, 223, 502
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 1 cut(s) 314
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 499
BspQI GCTCTTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 4 cut(s) 30, 421, 491, 516
Bst6I CTCTTC 2 cut(s) 269, 344
BstDEI CTNAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 33, 424, 494, 519
BstMAI GTCTC 6 cut(s) 136, 207, 220, 311, 381, 506
BstMBI GATC 4 cut(s) 30, 421, 491, 516
BstMCI CGRYCG 3 cut(s) 224, 255, 519
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 360
BstUI CGCG 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BstZI CGGCCG 1 cut(s) 221
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 3 cut(s) 147, 223, 502
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 47
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 333
Cfr42I CCGCGG 1 cut(s) 315
Csp6I GTAC 1 cut(s) 470
CviAII CATG 4 cut(s) 18, 259, 431, 488
CviJI RGCY 9 cut(s) 74, 147, 183, 223, 311, 333, 428, 502, 528
CviKI_1 RGCY 9 cut(s) 74, 147, 183, 223, 311, 333, 428, 502, 528
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 1 cut(s) 52
DpnI GATC 4 cut(s) 32, 423, 493, 518
DpnII GATC 4 cut(s) 30, 421, 491, 516
EaeI YGGCCR 2 cut(s) 145, 221
EagI CGGCCG 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 269, 344
EarI CTCTTC 2 cut(s) 269, 344
Ecl136II GAGCTC 1 cut(s) 428
EclXI CGGCCG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 430
Eco52I CGGCCG 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 430
Esp3I CGTCTC 3 cut(s) 136, 220, 506
FaeI CATG 4 cut(s) 21, 262, 434, 491
FaiI YATR 8 cut(s) 19, 35, 260, 339, 371, 432, 475, 489
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 4 cut(s) 17, 258, 430, 487
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 1 cut(s) 312
FspAI RTGCGCAY 1 cut(s) 22
FspBI CTAG 2 cut(s) 135, 458
FspI TGCGCA 1 cut(s) 22
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 3 cut(s) 147, 223, 502
HapII CCGG 5 cut(s) 84, 144, 334, 362, 384
HhaI GCGC 1 cut(s) 23
Hin1II CATG 4 cut(s) 21, 262, 434, 491
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 3 cut(s) 161, 189, 479
HpaII CCGG 5 cut(s) 84, 144, 334, 362, 384
HphI GGTGA 2 cut(s) 73, 184
Hpy188I TCNGA 2 cut(s) 124, 378
Hpy188III TCNNGA 6 cut(s) 54, 92, 135, 206, 250, 431
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 460
HpyCH4V TGCA 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 4 cut(s) 21, 262, 434, 491
HspAI GCGC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 30
KspI CCGCGG 1 cut(s) 315
Kzo9I GATC 4 cut(s) 30, 421, 491, 516
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 39, 97, 157, 347, 375, 397
MaeI CTAG 2 cut(s) 135, 458
MaeIII GTNAC 1 cut(s) 190
MalI GATC 4 cut(s) 32, 423, 493, 518
MboI GATC 4 cut(s) 30, 421, 491, 516
MboII GAAGA 7 cut(s) 6, 256, 296, 361, 405, 408, 431
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 506
MlyI GAGTC 2 cut(s) 155, 198
MmeI TCCRAC 2 cut(s) 147, 327
MnlI CCTC 6 cut(s) 61, 130, 251, 254, 257, 492
MseI TTAA 3 cut(s) 63, 275, 414
MslI CAYNNNNRTG 3 cut(s) 16, 197, 435
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 5 cut(s) 84, 144, 334, 362, 384
MspR9I CCNGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 314
NciI CCSGG 1 cut(s) 362
NdeII GATC 4 cut(s) 30, 421, 491, 516
NlaIII CATG 4 cut(s) 21, 262, 434, 491
NlaIV GGNNCC 1 cut(s) 75
NmeAIII GCCGAG 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 22
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 197
PagI TCATGA 1 cut(s) 430
PceI AGGCCT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PfeI GAWTC 1 cut(s) 479
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 313
Ple19I CGATCG 1 cut(s) 519
PleI GAGTC 2 cut(s) 155, 197
PpsI GAGTC 2 cut(s) 155, 197
Psp124BI GAGCTC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 128
PvuI CGATCG 1 cut(s) 519
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 3 cut(s) 16, 197, 435
SacI GAGCTC 1 cut(s) 430
SacII CCGCGG 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 63, 275, 414
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 4 cut(s) 30, 421, 491, 516
SchI GAGTC 2 cut(s) 155, 198
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 430
SetI ASST 5 cut(s) 122, 243, 430, 471, 530
Sfr303I CCGCGG 1 cut(s) 315
SgrBI CCGCGG 1 cut(s) 315
SmiMI CAYNNNNRTG 3 cut(s) 16, 197, 435
Sse9I AATT 1 cut(s) 506
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 3 cut(s) 195, 312, 314
SspI AATATT 2 cut(s) 215, 357
SspMI CTAG 2 cut(s) 135, 458
SstI GAGCTC 1 cut(s) 430
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 360
TaqI TCGA 1 cut(s) 424
TaqII GACCGA 1 cut(s) 269
TasI AATT 1 cut(s) 506
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 3 cut(s) 63, 275, 414
Tru9I TTAA 3 cut(s) 63, 275, 414
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 6, 432
Tth111I GACNNNGTC 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 262
XspI CTAG 2 cut(s) 135, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.