Prupe.5G234600_v2.0.a1

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015326
Physical Location & Seq
Reverse (-)
17802263 .. 17802796
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G234600.1

Sequence Viewer

Length: 534 bp
ATGGGGAACGCAGCAGCTTCTTGTGCTCCTTCATTGGTCATCTCAAGCAGTGGAGTTGTAAAGGTTTTGTTTTTGGATGGAAGATTGGAAGTGTACACAAGGGCAGTGAAAGCAGCAGAGCTGATGTTAGAGAATCCAGGGCAGTTTGTGTGTGAATCTAGCAGCCTCAAAGTGGGCAACAGGGTTCATGGCCTTACAGCTGATGAAGAGCTCGAAAGGCGCCAGTTCTATTTTCTTCTTCCCATGGATCTGCTTTACTCTGTGCTCACACATGAAGAGCTCAGCTCTCTGACTTACAAGGCTTCAGAGGCACTCAAGCACAGAAGTTTCAACAGTTTCAGTAAGATTTTTCCCGTCCTCGGAGAGTTTTGCATGTTTCCTTCAGAAGCCAAGAGATTGGATAAAAATATTGGTGATGTTATTAGTCCTTCAAGCCATTCAGAGCCAATGTTAGTATTAGTGGAGAGGTACTCAAAGCAAAGATCATGGAAGCCTGCATTGGAGACCATTGCTGAAACTCCATCTACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

6.21

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18290
fragaria_vesca FvH4_5g17470
malus_domestica MD06G1228100.v1.1 MD14G1237300.v1.1
prunus_persica Prupe.5G234600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178221
rosa_laevigata RLG00000005462
rosa_multiflora Rmu_co8411017.1_g000001 Rmu_sc0007855.1_g000004
rosa_roxburghii Rroxscaffold_3G00275070
rosa_rugosa Rorug06G0415100
rosa_samantha Rh7AG014200 Rh7BG013700 Rh7CG013600 Rh7DG013900
rosa_wichuraiana Rw7G001110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 219
AclWI GGATC 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 288, 366
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 2 cut(s) 95, 470
AfiI CCNNNNNNNGG 2 cut(s) 172, 359
AgsI TTSAA 2 cut(s) 331, 432
AjnI CCWGG 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 6 cut(s) 17, 121, 200, 211, 280, 285
AluI AGCT 6 cut(s) 17, 121, 200, 211, 280, 285
Alw21I GWGCWC 4 cut(s) 28, 213, 267, 282
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 4 cut(s) 11, 14, 113, 162
AspLEI GCGC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 425
BanI GGYRCC 1 cut(s) 219
BanII GRGCYC 2 cut(s) 213, 282
Bbv12I GWGCWC 4 cut(s) 28, 213, 267, 282
BbvI GCAGC 4 cut(s) 23, 26, 125, 174
BccI CCATC 2 cut(s) 71, 529
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 223
BisI GCNGC 4 cut(s) 12, 15, 114, 163
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 4 cut(s) 13, 16, 115, 164
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 138
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 455, 487
Bpu1102I GCTNAGC 1 cut(s) 281
BpuEI CTTGAG 2 cut(s) 28, 299
BsaHI GRCGYC 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 137, 243, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 359
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 137, 243, 358
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 172, 359
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 4 cut(s) 23, 26, 125, 174
BshFI GGCC 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 219
BsiHKAI GWGCWC 4 cut(s) 28, 213, 267, 282
BslI CCNNNNNNNGG 2 cut(s) 172, 359
BsmAI GTCTC 1 cut(s) 497
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 497
Bsp1286I GDGCHC 4 cut(s) 28, 213, 267, 282
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 2 cut(s) 247, 482
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 243
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 255
BspQI GCTCTTC 2 cut(s) 201, 270
BspT107I GGYRCC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 137, 243, 358
BssMI GATC 2 cut(s) 247, 482
BssNI GRCGYC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 201, 270
BstACI GRCGYC 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 250, 485
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 2 cut(s) 247, 482
BstMWI GCNNNNNNNGC 4 cut(s) 23, 110, 217, 308
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 4 cut(s) 23, 26, 125, 174
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 2 cut(s) 55, 111
BtsIMutI CAGTG 2 cut(s) 55, 111
Cac8I GCNNGC 1 cut(s) 495
CfoI GCGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 94, 469
CviAII CATG 5 cut(s) 188, 244, 272, 373, 486
CviQI GTAC 2 cut(s) 94, 469
DdeI CTNAG 1 cut(s) 281
DinI GGCGCC 1 cut(s) 221
DpnI GATC 2 cut(s) 249, 484
DpnII GATC 2 cut(s) 247, 482
Eam1104I CTCTTC 2 cut(s) 201, 270
EarI CTCTTC 2 cut(s) 201, 270
Ecl136II GAGCTC 2 cut(s) 211, 280
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 2 cut(s) 213, 282
Eco31I GGTCTC 1 cut(s) 497
Eco53kI GAGCTC 2 cut(s) 211, 280
Eco57I CTGAAG 2 cut(s) 288, 366
EcoICRI GAGCTC 2 cut(s) 211, 280
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 213, 282
EgeI GGCGCC 1 cut(s) 221
EheI GGCGCC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 5 cut(s) 191, 247, 275, 376, 489
FaiI YATR 5 cut(s) 189, 245, 273, 374, 487
FatI CATG 5 cut(s) 187, 243, 271, 372, 485
Fnu4HI GCNGC 4 cut(s) 12, 15, 114, 163
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 2 cut(s) 213, 282
Fsp4HI GCNGC 4 cut(s) 12, 15, 114, 163
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 221
GluI GCNGC 4 cut(s) 12, 15, 114, 163
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 1 cut(s) 192
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 5 cut(s) 191, 247, 275, 376, 489
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 2 cut(s) 133, 155
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 2 cut(s) 94, 96
Hpy188I TCNGA 5 cut(s) 291, 307, 362, 385, 442
Hpy8I GTNNAC 2 cut(s) 94, 96
HpyAV CCTTC 3 cut(s) 39, 390, 438
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 372, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 110, 217, 308
HpyF3I CTNAG 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 5 cut(s) 191, 247, 275, 376, 489
HspAI GCGC 1 cut(s) 220
KasI GGCGCC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 247, 482
LguI GCTCTTC 2 cut(s) 201, 270
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 123, 150, 166, 236, 507
Lsp1109I GCAGC 4 cut(s) 23, 26, 125, 174
MaeI CTAG 1 cut(s) 159
MalI GATC 2 cut(s) 249, 484
MboI GATC 2 cut(s) 247, 482
MboII GAAGA 5 cut(s) 93, 218, 227, 230, 287
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 4 cut(s) 28, 213, 267, 282
Mly113I GGCGCC 1 cut(s) 220
MnlI CCTC 4 cut(s) 176, 301, 368, 459
MseI TTAA 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 23, 110, 217, 308
NarI GGCGCC 1 cut(s) 220
NcoI CCATGG 1 cut(s) 243
NdeII GATC 2 cut(s) 247, 482
NlaIII CATG 5 cut(s) 191, 247, 275, 376, 489
NlaIV GGNNCC 1 cut(s) 221
NspI RCATGY 1 cut(s) 376
PciSI GCTCTTC 2 cut(s) 201, 270
PfeI GAWTC 2 cut(s) 133, 155
PkrI GCNGC 4 cut(s) 13, 16, 115, 164
PluTI GGCGCC 1 cut(s) 223
Psp124BI GAGCTC 2 cut(s) 213, 282
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 95, 470
RsaNI GTAC 2 cut(s) 94, 469
SacI GAGCTC 2 cut(s) 213, 282
SapI GCTCTTC 2 cut(s) 201, 270
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 4 cut(s) 12, 15, 114, 163
Sau3AI GATC 2 cut(s) 247, 482
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 4 cut(s) 28, 213, 267, 282
SetI ASST 8 cut(s) 19, 66, 123, 202, 213, 282, 287, 470
SfoI GGCGCC 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 43, 314
SmoI CTYRAG 2 cut(s) 43, 314
SspDI GGCGCC 1 cut(s) 219
SspI AATATT 1 cut(s) 409
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 2 cut(s) 213, 282
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 335
TaqI TCGA 1 cut(s) 213
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 2 cut(s) 133, 155
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TscAI CASTG 2 cut(s) 55, 111
TseI GCWGC 4 cut(s) 11, 14, 113, 162
TspDTI ATGAA 4 cut(s) 21, 176, 219, 288
TspRI CASTG 2 cut(s) 55, 111
XceI RCATGY 1 cut(s) 376
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.