Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009071

Physical Location & Seq

Genomic Coordinates Reverse (-)

6311443 .. 6313931

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCCTGCCATTGCTTCTAAGCAGTATTCAGACGATGTTAGTCTTCTAGTTTTGTTGCTTGATACGAATCCTCTTTTCTGGAGCACTACATCGATTACCTTCTCTCAGTTCCTTTCTCATGTGCTTGCGTTTCTTAATGCGGTTTTGGGGTTAAATCAGTTGAACCAAGTTGTAGTTATAGCTACTGGATACAGTTCTTGTGATTACATTTATGATTCGTCTTTGACATCAAATCATGGAAATTTCGAGAGCAATGGAACTGGAATGCCTGCAATTTTTGGTTCTTTGCTTAAGAAATTGGAAGAGTTTGTTACCAAAGATGAGGAGCTCAGCAAGGAGGAAGTGTCTGAGGATAGAATACCTTCTTGTCTCTTGTCAGGATCACTCTCCATGGCTCTTTGCTATATACAGAGGGTTTTCCGTTCTGGACATCTTCATCCCCAGCCTCGGATTTTATGCTTGCAAGGTTCCCCAGATGGCCCGGAACAGTATGTTGCTGTTATGAACTCTATCTTCTCTGCCCAACGCTTGATGGTTCCCATTGATTCGTGTTACATAGGTGTACAGAACTCAGCATTTTTGCAGCAGGCATCTTATATAACTGGTGGTGTACATCATACACCTAAACAGTTGGATGGGCTATTTCAATATCTAACGACAATCTTTGCAACCGATTTGCACTCCCGCGGTTTTGTACAACTTCCTAAACCCATAGGTGTAGATTTTCGCGCATCGTGCTTTTGCCACAAGAAGACAATAGATATGGGCTACATATGCTCAGTGTGTCTGTCCATTTTCTGTGAGCATCACAAGAAATGTTCAACCTGCGGGTCTGTATTTGGTCAGTCTAAACTTGATGATGCTTCATCTGCCTCTGATAAGAAGAGAAAAGCTCCTAGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

301

Amino Acids

33.07

Weight (kDa)

6.35

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb4	PF03850	13 - 277	4.1e-96	Transcription factor Tfb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18340
fragaria_vesca	FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720
malus_domestica	MD15G1351400.v1.1
prunus_persica	Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1
pyrus_communis	pycom15g31380
rosa_chinensis	RchiOBHm_Chr6g0295621
rosa_laevigata	RLG00000011784
rosa_multiflora	Rmu_sc0013988.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172310
rosa_rugosa	Rorug06G0252900
rosa_samantha	Rh6BG374000 Rh6CG380300 Rh6DG366900
rosa_wichuraiana	Rw6G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	833
AccII	CGCG	2 cut(s)	687, 729
AciI	CCGC	4 cut(s)	140, 685, 687, 828
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	4 cut(s)	564, 612, 696, 901
AfiI	CCNNNNNNNGG	1 cut(s)	447
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	163, 647, 822
AluBI	AGCT	3 cut(s)	182, 328, 893
AluI	AGCT	3 cut(s)	182, 328, 893
Alw21I	GWGCWC	2 cut(s)	86, 330
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	583
ApoI	RAATTY	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	2 cut(s)	35, 758
Bbv12I	GWGCWC	2 cut(s)	86, 330
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	3 cut(s)	470, 526, 629
BciVI	GTATCC	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	47, 897
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	584
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	469, 537
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	4 cut(s)	599, 740, 814, 850
BpiI	GAAGAC	2 cut(s)	35, 758
BplI	GAGNNNNNCTC	1 cut(s)	877
BpmI	CTGGAG	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	390, 446, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	3 cut(s)	190, 265, 607
Bse3DI	GCAATG	2 cut(s)	9, 259
Bse8I	GATNNNNATC	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	390, 446, 685
BseGI	GGATG	2 cut(s)	436, 640
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMI	GCAATG	2 cut(s)	9, 259
BseMII	CTCAG	5 cut(s)	119, 339, 343, 585, 792
BseNI	ACTGG	3 cut(s)	190, 265, 607
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	595
BseYI	CCCAGC	1 cut(s)	441
Bsh1236I	CGCG	2 cut(s)	687, 729
BshFI	GGCC	1 cut(s)	480
BshVI	ATCGAT	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	86, 330
BsiSI	CCGG	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	86, 330
Bsp1407I	TGTACA	3 cut(s)	562, 610, 694
Bsp143I	GATC	1 cut(s)	380
Bsp1720I	GCTNAGC	1 cut(s)	329
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	4 cut(s)	140, 685, 687, 828
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	5 cut(s)	118, 340, 342, 584, 791
BspDI	ATCGAT	1 cut(s)	92
BspFNI	CGCG	2 cut(s)	687, 729
BspLI	GGNNCC	2 cut(s)	469, 537
BspMI	ACCTGC	1 cut(s)	833
BspPI	GGATC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	9, 259
BsrGI	TGTACA	3 cut(s)	562, 610, 694
BsrI	ACTGG	3 cut(s)	190, 265, 607
BssECI	CCNNGG	3 cut(s)	390, 446, 685
BssMI	GATC	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	194, 489, 630
Bst6I	CTCTTC	2 cut(s)	297, 878
BstAFI	CTTAAG	1 cut(s)	290
BstAUI	TGTACA	3 cut(s)	562, 610, 694
BstC8I	GCNNGC	5 cut(s)	6, 126, 270, 461, 588
BstDEI	CTNAG	6 cut(s)	18, 105, 329, 348, 571, 778
BstDSI	CCRYGG	2 cut(s)	390, 685
BstF5I	GGATG	2 cut(s)	436, 640
BstFNI	CGCG	2 cut(s)	687, 729
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	3 cut(s)	735, 774, 869
BstSCI	CCNGG	1 cut(s)	480
BstUI	CGCG	2 cut(s)	687, 729
BstV1I	GCAGC	1 cut(s)	595
BstV2I	GAAGAC	2 cut(s)	35, 758
Bsu15I	ATCGAT	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	390, 685
BtsCI	GGATG	2 cut(s)	436, 640
BtsIMutI	CAGTG	1 cut(s)	786
BveI	ACCTGC	1 cut(s)	833
Cac8I	GCNNGC	5 cut(s)	6, 126, 270, 461, 588
CfoI	GCGC	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	479
Cfr42I	CCGCGG	1 cut(s)	688
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	563, 611, 695, 900
CviAII	CATG	3 cut(s)	119, 236, 391
CviJI	RGCY	8 cut(s)	182, 328, 395, 445, 480, 640, 768, 893
CviKI_1	RGCY	8 cut(s)	182, 328, 395, 445, 480, 640, 768, 893
CviQI	GTAC	4 cut(s)	563, 611, 695, 900
DdeI	CTNAG	6 cut(s)	18, 105, 329, 348, 571, 778
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
Eam1104I	CTCTTC	2 cut(s)	297, 878
EarI	CTCTTC	2 cut(s)	297, 878
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	122, 239, 394
FatI	CATG	3 cut(s)	118, 235, 390
FauI	CCCGC	2 cut(s)	692, 821
FauNDI	CATATG	1 cut(s)	773
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	2 cut(s)	423, 647
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	2 cut(s)	47, 897
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	1 cut(s)	584
GsaI	CCCAGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	1 cut(s)	482
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	3 cut(s)	122, 239, 394
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HinfI	GANTC	3 cut(s)	67, 215, 545
HpaII	CCGG	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	563, 611
Hpy188I	TCNGA	4 cut(s)	31, 349, 450, 877
Hpy188III	TCNNGA	4 cut(s)	79, 247, 378, 426
Hpy8I	GTNNAC	2 cut(s)	563, 611
HpyAV	CCTTC	2 cut(s)	109, 372
HpyCH4III	ACNGT	3 cut(s)	194, 489, 630
HpyCH4V	TGCA	5 cut(s)	272, 463, 583, 668, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	735, 774, 869
HpyF3I	CTNAG	6 cut(s)	18, 105, 329, 348, 571, 778
Hsp92II	CATG	3 cut(s)	122, 239, 394
HspAI	GCGC	1 cut(s)	729
KspI	CCGCGG	1 cut(s)	688
Kzo9I	GATC	1 cut(s)	380
LmnI	GCTCC	3 cut(s)	81, 325, 898
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	4 cut(s)	599, 740, 814, 850
MaeI	CTAG	2 cut(s)	47, 897
MaeIII	GTNAC	2 cut(s)	310, 551
MalI	GATC	1 cut(s)	382
MboI	GATC	1 cut(s)	380
MboII	GAAGA	6 cut(s)	35, 314, 425, 505, 763, 895
MhlI	GDGCHC	2 cut(s)	86, 330
MluCI	AATT	3 cut(s)	241, 273, 296
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	7 cut(s)	81, 316, 331, 343, 405, 456, 883
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	3 cut(s)	135, 152, 291
MspA1I	CMGCKG	1 cut(s)	687
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	270
MvnI	CGCG	2 cut(s)	687, 729
MwoI	GCNNNNNNNGC	3 cut(s)	735, 774, 869
NciI	CCSGG	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	773
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	122, 239, 394
NlaIV	GGNNCC	2 cut(s)	469, 537
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	67, 215, 545
PkrI	GCNGC	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	469, 537
PspPI	GGNCC	1 cut(s)	479
RsaI	GTAC	4 cut(s)	564, 612, 696, 901
RsaNI	GTAC	4 cut(s)	563, 611, 695, 900
SacI	GAGCTC	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	688
SaqAI	TTAA	3 cut(s)	135, 152, 291
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	1 cut(s)	380
Sau96I	GGNCC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	86, 330
SfaNI	GCATC	4 cut(s)	599, 740, 814, 850
Sfr303I	CCGCGG	1 cut(s)	688
SgrBI	CCGCGG	1 cut(s)	688
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	241, 273, 296
SsiI	CCGC	4 cut(s)	140, 685, 687, 828
SspMI	CTAG	2 cut(s)	47, 897
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	3 cut(s)	194, 489, 630
TaqI	TCGA	2 cut(s)	92, 246
TasI	AATT	3 cut(s)	241, 273, 296
TatI	WGTACW	3 cut(s)	562, 610, 694
TfiI	GAWTC	3 cut(s)	67, 215, 545
Tru1I	TTAA	3 cut(s)	135, 152, 291
Tru9I	TTAA	3 cut(s)	135, 152, 291
TscAI	CASTG	1 cut(s)	786
TseI	GCWGC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	425, 518, 855
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	786
Vha464I	CTTAAG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	2 cut(s)	47, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.