Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009071

Physical Location & Seq

Genomic Coordinates Forward (+)

12633492 .. 12637499

Gene Structure 4008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTTCGGTCCCTTCAAAGCTCTATGCCGATGACGTCAGCCTTCTGATGGTTTTGTTAGACACCAACCCTTTCTTCTGGAGCTCATCTTCTCTCCCATTCTCCAAGTTCCTCTCCCACGTGCTTACATTTTTGAACTCGATTTTACTACTCAATCAGCTCAACCAAGTAGTGGTTATTGCTACCGGGTACAGTTCATGTAGCTACATCTACGATTCTGCTTCGGCTCCGAGCCACGGCTCTGATCAAGGAAGAATGCCTGCGCTTTGCTCTAACTTGTTGCAGAAGTTGGAGGAATTTGTGACCGAAGATGAGCAATTGCTCAAGGAAGCCTCAGCCGAAGGGATTCCTTCTTCGCTGTTATCGGGGTCACTGTCAATGGCTCTATGCTATATACAGAAGGTTTTTCGATCAGGACCAATGCATCCTCAACCCCGGATTTTATGCTTGCAGGGATCGTCAGATGGACCTGACCAATATGTTGCAATTATGAATGCAATATTTTCTGCACAGCGTTCAATGGTTCCTATAGACTCTTGCTATATGGGCTCTCATAACTCTGCCTTCCTACAGCAGGCTTCATACATTACTGGTGGTGTATATCTGAAGCCGCAACAACCAGATGGACTGCTTCAATATCTTACGACAGTTTTTGCCACTGATTTGCATTCCCGAGCATTTTTACAGCTTCCCAAGTCTGCTGGAGTGGATTTTCGTGCTTCGTGCTTTTGCCATAAAAAAACAATAGACACAGGCTACATTTGTTCTGTGTGCTTGTCCATATTTTGCAAGTATCACAAGAAATGTTCAACTTGTGGGTCAGTATTTGGTCAAGCCCAGTCAGAAGTTCCCTCATCAACCAACAGAAAAAGAAAGGCTTCAGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

297

Amino Acids

32.34

Weight (kDa)

7.5

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb4	PF03850	13 - 273	7.8e-95	Transcription factor Tfb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18340
fragaria_vesca	FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720
malus_domestica	MD15G1351400.v1.1
prunus_persica	Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1
pyrus_communis	pycom15g31380
rosa_chinensis	RchiOBHm_Chr6g0295621
rosa_laevigata	RLG00000011784
rosa_multiflora	Rmu_sc0013988.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172310
rosa_rugosa	Rorug06G0252900
rosa_samantha	Rh6BG374000 Rh6CG380300 Rh6DG366900
rosa_wichuraiana	Rw6G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	2 cut(s)	626, 864
AcvI	CACGTG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 574
AgsI	TTSAA	5 cut(s)	18, 136, 519, 635, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	5 cut(s)	22, 84, 160, 204, 688
AluI	AGCT	5 cut(s)	22, 84, 160, 204, 688
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	672
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	2 cut(s)	345, 877
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	10, 416, 467
AsuC2I	CCSGG	2 cut(s)	187, 436
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	3 cut(s)	10, 416, 467
BanII	GRGCYC	2 cut(s)	86, 551
BbrPI	CACGTG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	86
BbvCI	CCTCAGC	1 cut(s)	334
BccI	CCATC	3 cut(s)	43, 458, 617
BceAI	ACGGC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	187, 436
BfmI	CTRYAG	2 cut(s)	528, 569
BisI	GCNGC	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	612
Bme1390I	CCNGG	2 cut(s)	187, 436
Bme18I	GGWCC	3 cut(s)	10, 416, 467
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	3 cut(s)	10, 416, 467
BmiI	GGNNCC	3 cut(s)	12, 228, 525
BmrFI	CCNGG	2 cut(s)	187, 436
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	832
BpmI	CTGGAG	2 cut(s)	100, 723
Bpu10I	CCTNAGC	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	187, 436
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	235, 434
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 574
Bse1I	ACTGG	2 cut(s)	595, 838
BseDI	CCNNGG	2 cut(s)	235, 434
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 574
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	595, 838
BsgI	GTGCAG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	186, 436
BslI	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 574
BsmI	GAATGC	3 cut(s)	261, 499, 667
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	2 cut(s)	86, 551
Bsp143I	GATC	3 cut(s)	244, 410, 455
BspACI	CCGC	1 cut(s)	611
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	3 cut(s)	12, 228, 525
BspPI	GGATC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	595, 838
BssECI	CCNNGG	2 cut(s)	235, 434
BssMI	GATC	3 cut(s)	244, 410, 455
BssNI	GRCGYC	1 cut(s)	36
Bst4CI	ACNGT	3 cut(s)	194, 375, 649
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	261, 449, 576
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	3 cut(s)	247, 413, 458
BstMBI	GATC	3 cut(s)	244, 410, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	185, 434
BstSFI	CTRYAG	2 cut(s)	528, 569
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	371, 657
Cac8I	GCNNGC	3 cut(s)	261, 449, 576
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	10, 416, 467
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	198
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	246, 412, 457
DpnII	GATC	3 cut(s)	244, 410, 455
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	86, 551
Eco47I	GGWCC	3 cut(s)	10, 416, 467
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	626, 864
Eco72I	CACGTG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	86, 551
FaeI	CATG	1 cut(s)	201
FalI	AAGNNNNNCTT	1 cut(s)	862
FatI	CATG	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	611
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	2 cut(s)	86, 551
Fsp4HI	GCNGC	1 cut(s)	611
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	611
GsuI	CTGGAG	2 cut(s)	100, 723
HapII	CCGG	2 cut(s)	186, 436
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	215, 346, 533
HpaII	CCGG	2 cut(s)	186, 436
Hpy188I	TCNGA	7 cut(s)	48, 231, 244, 463, 606, 844, 883
Hpy188III	TCNNGA	3 cut(s)	79, 414, 672
HpyAV	CCTTC	6 cut(s)	24, 53, 335, 360, 394, 574
HpyCH4III	ACNGT	3 cut(s)	194, 375, 649
HpyCH4IV	ACGT	2 cut(s)	36, 120
HpyCH4V	TGCA	8 cut(s)	283, 424, 451, 485, 497, 509, 667, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	2 cut(s)	36, 120
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	244, 410, 455
LmnI	GCTCC	2 cut(s)	81, 232
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	2 cut(s)	36, 120
MaeIII	GTNAC	2 cut(s)	301, 369
MalI	GATC	3 cut(s)	246, 412, 457
MboI	GATC	3 cut(s)	244, 410, 455
MboII	GAAGA	5 cut(s)	67, 81, 264, 320, 345
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	86, 551
MluCI	AATT	3 cut(s)	296, 317, 486
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	122, 286, 343, 438, 862
Mph1103I	ATGCAT	1 cut(s)	426
MroXI	GAANNNNTTC	2 cut(s)	345, 877
MspI	CCGG	2 cut(s)	186, 436
MspR9I	CCNGG	2 cut(s)	187, 436
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	3 cut(s)	261, 499, 667
MwoI	GCNNNNNNNGC	1 cut(s)	546
NciI	CCSGG	2 cut(s)	187, 436
NdeII	GATC	3 cut(s)	244, 410, 455
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	3 cut(s)	12, 228, 525
NmuCI	GTSAC	2 cut(s)	301, 369
NsiI	ATGCAT	1 cut(s)	426
PctI	GAATGC	3 cut(s)	261, 499, 667
PdmI	GAANNNNTTC	2 cut(s)	345, 877
PfeI	GAWTC	2 cut(s)	215, 346
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	612
PleI	GAGTC	1 cut(s)	527
PmaCI	CACGTG	1 cut(s)	121
PmlI	CACGTG	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	12, 228, 525
PspPI	GGNCC	3 cut(s)	10, 416, 467
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	611
Sau3AI	GATC	3 cut(s)	244, 410, 455
Sau96I	GGNCC	3 cut(s)	10, 416, 467
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	187, 436
SduI	GDGCHC	2 cut(s)	86, 551
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	2 cut(s)	528, 569
SinI	GGWCC	3 cut(s)	10, 416, 467
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	296, 317, 486
SsiI	CCGC	1 cut(s)	611
SspI	AATATT	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	185, 434
TaaI	ACNGT	3 cut(s)	194, 375, 649
TaiI	ACGT	2 cut(s)	39, 123
TaqI	TCGA	2 cut(s)	140, 409
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	296, 317, 486
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	2 cut(s)	215, 346
TscAI	CASTG	2 cut(s)	378, 664
TseFI	GTSAC	2 cut(s)	301, 369
Tsp45I	GTSAC	2 cut(s)	301, 369
TspDTI	ATGAA	3 cut(s)	186, 506, 570
TspRI	CASTG	2 cut(s)	378, 664
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	3 cut(s)	10, 416, 467
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	2 cut(s)	345, 877
ZraI	GACGTC	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.