Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009071

Physical Location & Seq

Genomic Coordinates Forward (+)

41399896 .. 41406230

Gene Structure 6335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTTCTGCTCCTTCAAAGCTCTATGCTGATGATGTTAGCCTTCTGATGGTTTTGCTCGACACGAACCCTTTCTTCTGGAGCTCATCTTCCCTCCCATTCTCCGTGTTTCTCTCCCATGTGCTTACATTTTTGAACTCGATTTTACTACTCAATCAACTCAACCAAGTTGTGGTTATTGCTACGGGATACAATTCCTGCAGTTACATCTACGATTCTTCTACCTCCACGAACCAGGGTTCTGATAATGGAAGAATGCCTGCGCGGTGCGTTAACTTGTTGCAGAAGCTGGAGGAGTTTGTGATCGAAGACGAGCAATTGATCAAAGAAGGCTTGAGAGAAGGGATTGCTTCTTCGCTGCTATCTGGGTCCTTATCAATGGCTCTTTGTTATATACAGAGAGTTTTTCGATCTGGACCGCTTCATCCTCAACCCCGGATTTTATGCTTGCAGGGATCATCGGATGGACCTGAACAATATGTTGCAATCATGAATGCCATATTTTCTGCACAACGGTCTGTGGTTCCTATAGATTCTTGTTATATGGGCTCTAGCAACTCTGCCTTCCTACAGCAGGCTTCATACATTACTGGTGGTGTGTATCTGAAGCCCCAACAACCGAATGGGCTGTTCCAATATCTCTCGACAGTTTTTGCAACTGATTTGCATTCTCGAGCCTTTTTACAGCTTCCTAAGTCTCTTGGTGTGGATTTTCGTGCCTCGTGTTTTTGCCATAAGAAGACAATAGACATGGGCTACATTTGTTCCGTGTGCTTGTCCATATTTTGTAAGCATCACAAGAAATGTTCAACTTGTGGGTCAGTATTTGGTCAAGCCCAGTCAGATGTTAACTCAACATCCAACAAGAAAAGAAAAACTCCAGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

297

Amino Acids

32.53

Weight (kDa)

8.22

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18340
fragaria_vesca	FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720
malus_domestica	MD15G1351400.v1.1
prunus_persica	Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1
pyrus_communis	pycom15g31380
rosa_chinensis	RchiOBHm_Chr6g0295621
rosa_laevigata	RLG00000011784
rosa_multiflora	Rmu_sc0013988.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172310
rosa_rugosa	Rorug06G0252900
rosa_samantha	Rh6BG374000 Rh6CG380300 Rh6DG366900
rosa_wichuraiana	Rw6G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	265, 419
AclWI	GGATC	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	626
AfiI	CCNNNNNNNGG	3 cut(s)	49, 172, 574
AgsI	TTSAA	3 cut(s)	18, 136, 810
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	22, 84, 289, 688
AluI	AGCT	4 cut(s)	22, 84, 289, 688
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	702, 878
AlwI	GGATC	1 cut(s)	463
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	369, 416, 467
AsuC2I	CCSGG	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	3 cut(s)	369, 416, 467
BanII	GRGCYC	2 cut(s)	86, 551
BauI	CACGAG	1 cut(s)	721
BbsI	GAAGAC	2 cut(s)	315, 746
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	2 cut(s)	43, 458
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	702, 878
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	3 cut(s)	199, 528, 569
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	2 cut(s)	236, 436
Bme18I	GGWCC	3 cut(s)	369, 416, 467
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	3 cut(s)	369, 416, 467
BmiI	GGNNCC	2 cut(s)	370, 525
BmrFI	CCNGG	2 cut(s)	236, 436
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	2 cut(s)	315, 746
BpmI	CTGGAG	3 cut(s)	100, 311, 864
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	235, 434
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 172, 574
Bse1I	ACTGG	2 cut(s)	595, 838
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	235, 434
BseGI	GGATG	3 cut(s)	424, 469, 857
BseLI	CCNNNNNNNGG	3 cut(s)	49, 172, 574
BseNI	ACTGG	2 cut(s)	595, 838
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	436
BslI	CCNNNNNNNGG	3 cut(s)	49, 172, 574
BsmAI	GTCTC	2 cut(s)	702, 878
BsmI	GAATGC	3 cut(s)	261, 499, 667
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	2 cut(s)	86, 551
Bsp143I	GATC	4 cut(s)	303, 321, 410, 455
BspACI	CCGC	2 cut(s)	265, 419
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	370, 525
BspMAI	CTGCAG	1 cut(s)	203
BspPI	GGATC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	595, 838
BssECI	CCNNGG	2 cut(s)	235, 434
BssMI	GATC	4 cut(s)	303, 321, 410, 455
BssSI	CACGAG	1 cut(s)	721
Bst2BI	CACGAG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	516, 649
BstC8I	GCNNGC	3 cut(s)	261, 449, 576
BstDEI	CTNAG	1 cut(s)	693
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	3 cut(s)	424, 469, 857
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	4 cut(s)	306, 324, 413, 458
BstMAI	GTCTC	2 cut(s)	702, 878
BstMBI	GATC	4 cut(s)	303, 321, 410, 455
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	234, 434
BstSFI	CTRYAG	3 cut(s)	199, 528, 569
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	315, 746
BsuI	GTATCC	1 cut(s)	182
BtsCI	GGATG	3 cut(s)	424, 469, 857
Cac8I	GCNNGC	3 cut(s)	261, 449, 576
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	369, 416, 467
CviAII	CATG	3 cut(s)	119, 490, 751
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	4 cut(s)	305, 323, 412, 457
DpnII	GATC	4 cut(s)	303, 321, 410, 455
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	86, 551
Eco47I	GGWCC	3 cut(s)	369, 416, 467
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	626
Eco88I	CYCGRG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	86, 551
FaeI	CATG	3 cut(s)	122, 493, 754
FatI	CATG	3 cut(s)	118, 489, 750
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	3 cut(s)	411, 476, 844
FriOI	GRGCYC	2 cut(s)	86, 551
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	3 cut(s)	100, 311, 864
HapII	CCGG	1 cut(s)	436
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	122, 493, 754
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	2 cut(s)	274, 850
HindII	GTYRAC	2 cut(s)	274, 850
HinfI	GANTC	2 cut(s)	215, 533
HpaI	GTTAAC	2 cut(s)	274, 850
HpaII	CCGG	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	274, 850
Hpy188I	TCNGA	5 cut(s)	48, 244, 463, 606, 844
Hpy188III	TCNNGA	6 cut(s)	79, 414, 490, 643, 672, 881
Hpy8I	GTNNAC	2 cut(s)	274, 850
HpyAV	CCTTC	5 cut(s)	24, 53, 323, 335, 574
HpyCH4III	ACNGT	2 cut(s)	516, 649
HpyCH4V	TGCA	7 cut(s)	201, 283, 451, 485, 509, 656, 667
HpyF3I	CTNAG	1 cut(s)	693
Hsp92II	CATG	3 cut(s)	122, 493, 754
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	321
KspAI	GTTAAC	2 cut(s)	274, 850
Kzo9I	GATC	4 cut(s)	303, 321, 410, 455
LmnI	GCTCC	2 cut(s)	16, 81
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	305, 323, 412, 457
MboI	GATC	4 cut(s)	303, 321, 410, 455
MboII	GAAGA	7 cut(s)	67, 81, 210, 264, 320, 345, 751
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	86, 551
MluCI	AATT	2 cut(s)	193, 317
MmeI	TCCRAC	1 cut(s)	885
MnlI	CCTC	5 cut(s)	104, 235, 286, 438, 730
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	273, 849
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	236, 436
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	3 cut(s)	261, 499, 667
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	265
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	4 cut(s)	303, 321, 410, 455
NlaIII	CATG	3 cut(s)	122, 493, 754
NlaIV	GGNNCC	2 cut(s)	370, 525
PaeR7I	CTCGAG	1 cut(s)	672
PagI	TCATGA	1 cut(s)	489
PctI	GAATGC	3 cut(s)	261, 499, 667
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	215, 533
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	370, 525
PspPI	GGNCC	3 cut(s)	369, 416, 467
PspPPI	RGGWCCY	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	273, 849
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	4 cut(s)	303, 321, 410, 455
Sau96I	GGNCC	3 cut(s)	369, 416, 467
ScrFI	CCNGG	2 cut(s)	236, 436
SduI	GDGCHC	2 cut(s)	86, 551
SetI	ASST	6 cut(s)	24, 86, 227, 291, 472, 690
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	3 cut(s)	199, 528, 569
Sfr274I	CTCGAG	1 cut(s)	672
SinI	GGWCC	3 cut(s)	369, 416, 467
SlaI	CTCGAG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	334, 672
SmoI	CTYRAG	2 cut(s)	334, 672
Sse9I	AATT	2 cut(s)	193, 317
SsiI	CCGC	2 cut(s)	265, 419
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	234, 434
TaaI	ACNGT	2 cut(s)	516, 649
TaqI	TCGA	6 cut(s)	60, 140, 306, 409, 644, 673
TasI	AATT	2 cut(s)	193, 317
TfiI	GAWTC	2 cut(s)	215, 533
Tru1I	TTAA	2 cut(s)	273, 849
Tru9I	TTAA	2 cut(s)	273, 849
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	413, 506, 570
TspGWI	ACGGA	2 cut(s)	94, 757
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	3 cut(s)	369, 416, 467
XagI	CCTNNNNNAGG	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.