Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009071

Physical Location & Seq

Genomic Coordinates Reverse (-)

39944432 .. 39945319

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAACCAAAAATCGATCTTGTCTTTGAAAAGGTGAAAGGTTTCTGCAGGGAGTATGGGCTTTTTGAGCACGACATCACAGGCTGTGACAAACTGCTGGTGAAGGAATGTGAGGAATTTATGGTTGAACCGCCACCGGCGGTGCTGGCAGAACTCAATCTATTTTCACCCAGTTCGTCTCGGTGTTCTGGTGTTTTAAAGGTCGGCGGACAGACGTCGAAGGCTAGAGTAGCGTCTGCTGGGCATGGAAGCAATGCGGCGGTGGTTTGCGCTGTTGCAGGACGCGGTGATGATCGTGGTGTGCTGGGAGGCAAGGCGCCGGTCAAAGTGCATGCATCACTGGGCTCTAAGATGGTAGGTATTCCAATAATCTCGGAGCAAGTGATGGCTGGCCTAGAGGAGGATGTCACTATCCAGGAGTTGGTCTCCTTGTCTAGGAAGAAAAGGAAGGCAGTGGAGATCTCTGCTAGGACTGGAAAACGGTTCTTAACTCTTCCTAAACATGGCCTTCAGCTTGATGGTGATATAACTTTGGCTTTGAGACACAAGCAAGGGAAGCTCCTGATCTCTCCTAAAAAGAAGAAGATGGGAAGACCAAAAGGCAGTAAGAACAAATCCAAGTTAGTCCGGGATTTGACTCAGGATGTGAAATTCAAATGTCAGAAAAAATGGAAAAGTCATAGGAAGGTTTCTGAAGTTCAGAGTGCTGAAGACAGTGAAGAGGATGTGGGTAAGAGCACTAAGGTAGAAGTGGCTCAGATTGGGGAGGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

258

Amino Acids

27.96

Weight (kDa)

9.51

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18340
fragaria_vesca	FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720
malus_domestica	MD15G1351400.v1.1
prunus_persica	Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1
pyrus_communis	pycom15g31380
rosa_chinensis	RchiOBHm_Chr6g0295621
rosa_laevigata	RLG00000011784
rosa_multiflora	Rmu_sc0013988.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172310
rosa_rugosa	Rorug06G0252900
rosa_samantha	Rh6BG374000 Rh6CG380300 Rh6DG366900
rosa_wichuraiana	Rw6G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccII	CGCG	1 cut(s)	285
AciI	CCGC	6 cut(s)	131, 140, 207, 257, 260, 285
AcsI	RAATTY	2 cut(s)	116, 650
AcuI	CTGAAG	3 cut(s)	494, 714, 729
AcyI	GRCGYC	2 cut(s)	215, 317
AfiI	CCNNNNNNNGG	4 cut(s)	400, 421, 435, 503
AgsI	TTSAA	3 cut(s)	29, 128, 655
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	3 cut(s)	514, 559, 774
AluI	AGCT	3 cut(s)	514, 559, 774
Alw21I	GWGCWC	2 cut(s)	72, 740
Alw26I	GTCTC	3 cut(s)	183, 430, 535
AoxI	GGCC	2 cut(s)	391, 505
ApoI	RAATTY	2 cut(s)	116, 650
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	272, 319
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	5 cut(s)	46, 112, 159, 299, 533
AsuNHI	GCTAGC	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	598, 717
Bbv12I	GWGCWC	2 cut(s)	72, 740
BccI	CCATC	4 cut(s)	346, 379, 512, 580
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	3 cut(s)	183, 430, 535
BfaI	CTAG	6 cut(s)	225, 395, 435, 468, 771, 775
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	320
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	416, 629
BmiI	GGNNCC	2 cut(s)	6, 318
BmrFI	CCNGG	2 cut(s)	416, 629
BmrI	ACTGGG	2 cut(s)	165, 350
BmsI	GCATC	1 cut(s)	344
BmtI	GCTAGC	1 cut(s)	774
BmuI	ACTGGG	2 cut(s)	165, 350
BoxI	GACNNNNGTC	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	598, 717
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpuMI	CCSGG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	215, 317
BsaI	GGTCTC	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 421, 435, 503
Bse118I	RCCGGY	2 cut(s)	136, 319
Bse1I	ACTGG	3 cut(s)	171, 345, 478
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	3 cut(s)	409, 649, 730
BseLI	CCNNNNNNNGG	4 cut(s)	400, 421, 435, 503
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	653, 770
BseNI	ACTGG	3 cut(s)	171, 345, 478
BseRI	GAGGAG	1 cut(s)	413
BseYI	CCCAGC	2 cut(s)	239, 304
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	393, 507
BshNI	GGYRCC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	72, 740
BsiSI	CCGG	3 cut(s)	137, 320, 628
BslI	CCNNNNNNNGG	4 cut(s)	400, 421, 435, 503
BsmAI	GTCTC	3 cut(s)	183, 430, 535
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	393, 507
Bso31I	GGTCTC	1 cut(s)	430
Bsp1286I	GDGCHC	3 cut(s)	72, 347, 740
Bsp143I	GATC	4 cut(s)	16, 292, 459, 564
BspACI	CCGC	6 cut(s)	131, 140, 207, 257, 260, 285
BspANI	GGCC	2 cut(s)	393, 507
BspCNI	CTCAG	2 cut(s)	652, 769
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	6, 318
BspMAI	CTGCAG	1 cut(s)	50
BspOI	GCTAGC	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	2 cut(s)	136, 319
BsrI	ACTGG	3 cut(s)	171, 345, 478
BssAI	RCCGGY	2 cut(s)	136, 319
BssMI	GATC	4 cut(s)	16, 292, 459, 564
BssNI	GRCGYC	2 cut(s)	215, 317
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	483, 716
Bst6I	CTCTTC	2 cut(s)	498, 714
BstACI	GRCGYC	2 cut(s)	215, 317
BstC8I	GCNNGC	4 cut(s)	147, 333, 391, 772
BstDEI	CTNAG	4 cut(s)	348, 639, 741, 756
BstENI	CCTNNNNNAGG	2 cut(s)	398, 433
BstF5I	GGATG	3 cut(s)	409, 649, 730
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	272, 319
BstKTI	GATC	4 cut(s)	19, 295, 462, 567
BstMAI	GTCTC	3 cut(s)	183, 430, 535
BstMBI	GATC	4 cut(s)	16, 292, 459, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 146, 230, 556
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	414, 627
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	285
BstV2I	GAAGAC	2 cut(s)	598, 717
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	393, 507
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	409, 649, 730
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	3 cut(s)	338, 459, 721
Cac8I	GCNNGC	4 cut(s)	147, 333, 391, 772
CfoI	GCGC	2 cut(s)	272, 319
Cfr10I	RCCGGY	2 cut(s)	136, 319
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	2 cut(s)	222, 291
CviAII	CATG	3 cut(s)	245, 332, 503
DdeI	CTNAG	4 cut(s)	348, 639, 741, 756
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	4 cut(s)	18, 294, 461, 566
DpnII	GATC	4 cut(s)	16, 292, 459, 564
DraI	TTTAAA	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	498, 714
EarI	CTCTTC	2 cut(s)	498, 714
EciI	GGCGGA	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	430
Eco57I	CTGAAG	3 cut(s)	494, 714, 729
EcoNI	CCTNNNNNAGG	2 cut(s)	398, 433
EcoRII	CCWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	3 cut(s)	248, 335, 506
FaiI	YATR	7 cut(s)	57, 122, 246, 333, 504, 527, 681
FatI	CATG	3 cut(s)	244, 331, 502
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	416, 656, 737
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	6 cut(s)	225, 395, 435, 468, 771, 775
GlaI	GCGC	2 cut(s)	271, 318
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	2 cut(s)	243, 308
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	393, 507
HapII	CCGG	3 cut(s)	137, 320, 628
HgaI	GACGC	2 cut(s)	222, 291
HhaI	GCGC	2 cut(s)	272, 319
Hin1I	GRCGYC	2 cut(s)	215, 317
Hin1II	CATG	3 cut(s)	248, 335, 506
Hin6I	GCGC	2 cut(s)	270, 317
HinP1I	GCGC	2 cut(s)	270, 317
HinfI	GANTC	1 cut(s)	637
HpaII	CCGG	3 cut(s)	137, 320, 628
HphI	GGTGA	5 cut(s)	46, 112, 159, 299, 533
Hpy188I	TCNGA	5 cut(s)	376, 663, 694, 702, 759
Hpy188III	TCNNGA	2 cut(s)	562, 641
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	5 cut(s)	97, 214, 442, 518, 679
HpyCH4III	ACNGT	2 cut(s)	483, 716
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	48, 278, 331, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 146, 230, 556
HpyF3I	CTNAG	4 cut(s)	348, 639, 741, 756
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	215, 317
Hsp92II	CATG	3 cut(s)	248, 335, 506
HspAI	GCGC	2 cut(s)	270, 317
KasI	GGCGCC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	16, 292, 459, 564
LmnI	GCTCC	2 cut(s)	376, 564
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	6 cut(s)	225, 395, 435, 468, 771, 775
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	86, 406
MalI	GATC	4 cut(s)	18, 294, 461, 566
MboI	GATC	4 cut(s)	16, 292, 459, 564
MboII	GAAGA	7 cut(s)	451, 485, 592, 595, 603, 722, 731
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	72, 347, 740
MluCI	AATT	2 cut(s)	116, 650
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	6 cut(s)	106, 302, 391, 394, 715, 760
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	197, 488
MspI	CCGG	3 cut(s)	137, 320, 628
MspR9I	CCNGG	2 cut(s)	416, 629
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	67, 146, 230, 556
NarI	GGCGCC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	4 cut(s)	16, 292, 459, 564
NheI	GCTAGC	1 cut(s)	770
NlaIII	CATG	3 cut(s)	248, 335, 506
NlaIV	GGNNCC	2 cut(s)	6, 318
NmuCI	GTSAC	2 cut(s)	86, 406
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	421
PfoI	TCCNGGA	2 cut(s)	414, 627
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	631
PluTI	GGCGCC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	2 cut(s)	239, 304
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	6, 318
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	197, 488
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	16, 292, 459, 564
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	2 cut(s)	416, 629
SduI	GDGCHC	3 cut(s)	72, 347, 740
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	318
SgrAI	CRCCGGYG	1 cut(s)	136
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	116, 650
SsiI	CCGC	6 cut(s)	131, 140, 207, 257, 260, 285
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	6 cut(s)	225, 395, 435, 468, 771, 775
StyD4I	CCNGG	2 cut(s)	414, 627
TaaI	ACNGT	2 cut(s)	483, 716
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	15, 218
TasI	AATT	2 cut(s)	116, 650
TauI	GCSGC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	197, 488
Tru9I	TTAA	2 cut(s)	197, 488
TscAI	CASTG	3 cut(s)	345, 459, 721
TseFI	GTSAC	2 cut(s)	86, 406
Tsp45I	GTSAC	2 cut(s)	86, 406
TspRI	CASTG	3 cut(s)	345, 459, 721
Van91I	CCANNNNNTGG	1 cut(s)	421
XagI	CCTNNNNNAGG	2 cut(s)	398, 433
XapI	RAATTY	2 cut(s)	116, 650
XceI	RCATGY	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	6 cut(s)	225, 395, 435, 468, 771, 775
ZraI	GACGTC	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.