Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009071

Physical Location & Seq

Genomic Coordinates Reverse (-)

21416659 .. 21421455

Gene Structure 4797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26720.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCCGTCCCTTCAAAGCTCTACGCCGATGACGTCAGCCTTCTGATGGTCTTGCTAGACACCAACCCGTTCTTCTGGAGCTCATCGTCTCTCCCATTCTCCAAGTATCTCTCCCATGTGCTTACATTTTTGAACTCGATTTTGCTGCTCAATCAACTCAACCAAGTAGTGGTGATTGCTACCGGGTACAGTTCATGTAGCTACATCTACGATTCGGCTTCGGCTCCTGGCCAGGGCTCTGATCAAGGAAGAATGCCGGCGCTTTGCTCTCACTTGCTGAAGAAGCTGGAGGAGTTTGTGGCCAAAGATGAGCAGCTGCTCAAGGAAGGCTCAGCTGAAGGGATTCCTTCTTCGCTGTTGTCGGGGTCGCTGTCAATGGCTCTATGCTATATACAGAAGGTTTTTCGATCAGGACCACAGCATCCTCACCCCAGGGGATCGTCAGATGGACCTGAGCAATATGTTGCAATCATGAATGCAATATTTTCTGCACAGCGTTCCATGGTTCCTATAGACTCTTGCTATATGGGCTCTAATAATTCTGCCTTCCTACAGCAGGCTTCATACATTACTGGTGGTGTATATCTGAAGCCCCAACAGCCAGATGGACTGCTTCAATATCTTACGACAGTTTTTGCCACTGATTTGCATTCCCGAGCATTTTTACAGCTCCCCAAGTCCGCTGGAGTGGATTTTCGTGCTTCGTGTTTTTGCCATAAAAAAACAATAGACACAGGCTACATTTGTTCTGTGTGCTTGTCCATATTTTGCAAGCATCACAAGAAATGTTCAACTTGTGGGTCAGTATTTGGTCAAGCCCAGTCAGAAGTTCCCTCAACAACCAACAAAAAAAGAAAGTCTTCAGAACCGCTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

294

Amino Acids

31.93

Weight (kDa)

8.43

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb4	PF03850	13 - 268	1e-87	Transcription factor Tfb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18340
fragaria_vesca	FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720
malus_domestica	MD15G1351400.v1.1
prunus_persica	Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1
pyrus_communis	pycom15g31380
rosa_chinensis	RchiOBHm_Chr6g0295621
rosa_laevigata	RLG00000011784
rosa_multiflora	Rmu_sc0013988.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172310
rosa_rugosa	Rorug06G0252900
rosa_samantha	Rh6BG374000 Rh6CG380300 Rh6DG366900
rosa_wichuraiana	Rw6G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	874
AciI	CCGC	2 cut(s)	684, 872
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	2 cut(s)	232, 303
AcuI	CTGAAG	4 cut(s)	302, 360, 611, 849
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 559
AgsI	TTSAA	4 cut(s)	18, 136, 620, 795
AjnI	CCWGG	3 cut(s)	229, 234, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	7 cut(s)	22, 84, 204, 289, 319, 338, 673
AluI	AGCT	7 cut(s)	22, 84, 204, 289, 319, 338, 673
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	657
AoxI	GGCC	2 cut(s)	232, 303
ApeKI	GCWGC	3 cut(s)	148, 316, 319
Asp700I	GAANNNNTTC	2 cut(s)	345, 862
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	416, 452
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	187, 422
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	2 cut(s)	416, 452
BalI	TGGCCA	2 cut(s)	234, 305
BanII	GRGCYC	3 cut(s)	86, 242, 536
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	135, 306, 328
BccI	CCATC	3 cut(s)	43, 443, 602
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	3 cut(s)	231, 236, 436
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	513, 554
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	3 cut(s)	149, 317, 320
BlpI	GCTNAGC	1 cut(s)	334
BlsI	GCNGC	3 cut(s)	150, 318, 321
Bme1390I	CCNGG	4 cut(s)	187, 231, 236, 436
Bme18I	GGWCC	2 cut(s)	416, 452
BmeT110I	CYCGRG	1 cut(s)	657
BmgT120I	GGNCC	2 cut(s)	416, 452
BmiI	GGNNCC	2 cut(s)	228, 510
BmrFI	CCNGG	4 cut(s)	187, 231, 236, 436
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	2 cut(s)	433, 787
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	3 cut(s)	100, 311, 708
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	235, 434, 435, 504
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 559
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	580, 823
BseBI	CCWGG	3 cut(s)	231, 236, 436
BseDI	CCNNGG	4 cut(s)	235, 434, 435, 504
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 559
BseMII	CTCAG	2 cut(s)	348, 447
BseNI	ACTGG	2 cut(s)	580, 823
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	135, 306, 328
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	234, 305
BsiHKAI	GWGCWC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	186, 260
BslI	CCNNNNNNNGG	4 cut(s)	49, 172, 236, 559
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmI	GAATGC	3 cut(s)	261, 484, 652
BsnI	GGCC	2 cut(s)	234, 305
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	3 cut(s)	86, 242, 536
Bsp143I	GATC	3 cut(s)	244, 410, 440
Bsp1720I	GCTNAGC	1 cut(s)	334
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	684, 872
BspANI	GGCC	2 cut(s)	234, 305
BspCNI	CTCAG	2 cut(s)	347, 448
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	228, 510
BspPI	GGATC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	874
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	580, 823
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	235, 434, 435, 504
BssMI	GATC	3 cut(s)	244, 410, 440
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	231, 236, 436
Bst4CI	ACNGT	2 cut(s)	194, 634
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	261, 561, 776
BstDEI	CTNAG	2 cut(s)	334, 456
BstDSI	CCRYGG	1 cut(s)	504
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	3 cut(s)	247, 413, 443
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	244, 410, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 531, 601
BstNI	CCWGG	3 cut(s)	231, 236, 436
BstSCI	CCNGG	4 cut(s)	185, 229, 234, 434
BstSFI	CTRYAG	2 cut(s)	513, 554
BstV1I	GCAGC	3 cut(s)	135, 306, 328
BstV2I	GAAGAC	1 cut(s)	855
BsuRI	GGCC	2 cut(s)	234, 305
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	3 cut(s)	261, 561, 776
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	416, 452
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	119, 198, 475, 505
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	334, 456
DpnI	GATC	3 cut(s)	246, 412, 442
DpnII	GATC	3 cut(s)	244, 410, 440
EaeI	YGGCCR	2 cut(s)	232, 303
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	3 cut(s)	86, 242, 536
Eco47I	GGWCC	2 cut(s)	416, 452
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	4 cut(s)	302, 360, 611, 849
Eco88I	CYCGRG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoRII	CCWGG	3 cut(s)	229, 234, 434
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	3 cut(s)	86, 242, 536
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	4 cut(s)	122, 201, 478, 508
FalI	AAGNNNNNCTT	2 cut(s)	847, 879
FatI	CATG	4 cut(s)	118, 197, 474, 504
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	149, 317, 320
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	3 cut(s)	86, 242, 536
Fsp4HI	GCNGC	3 cut(s)	149, 317, 320
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	149, 317, 320
GsuI	CTGGAG	3 cut(s)	100, 311, 708
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	234, 305
HapII	CCGG	2 cut(s)	186, 260
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	122, 201, 478, 508
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	215, 346, 518
HpaII	CCGG	2 cut(s)	186, 260
HphI	GGTGA	2 cut(s)	187, 422
Hpy188I	TCNGA	6 cut(s)	48, 244, 448, 591, 829, 868
Hpy188III	TCNNGA	4 cut(s)	79, 414, 475, 657
HpyAV	CCTTC	7 cut(s)	24, 53, 323, 335, 360, 394, 559
HpyCH4III	ACNGT	2 cut(s)	194, 634
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	470, 482, 494, 652, 774
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 531, 601
HpyF3I	CTNAG	2 cut(s)	334, 456
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	122, 201, 478, 508
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	244, 410, 440
LmnI	GCTCC	4 cut(s)	81, 232, 678, 879
Lsp1109I	GCAGC	3 cut(s)	135, 306, 328
LweI	GCATC	2 cut(s)	433, 787
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	36
MalI	GATC	3 cut(s)	246, 412, 442
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	3 cut(s)	244, 410, 440
MboII	GAAGA	5 cut(s)	67, 264, 295, 345, 855
MhlI	GDGCHC	3 cut(s)	86, 242, 536
MlsI	TGGCCA	2 cut(s)	234, 305
MluCI	AATT	1 cut(s)	541
MluNI	TGGCCA	2 cut(s)	234, 305
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	3 cut(s)	286, 438, 847
Mox20I	TGGCCA	2 cut(s)	234, 305
MroNI	GCCGGC	1 cut(s)	259
MroXI	GAANNNNTTC	2 cut(s)	345, 862
MscI	TGGCCA	2 cut(s)	234, 305
Msp20I	TGGCCA	2 cut(s)	234, 305
MspA1I	CMGCKG	3 cut(s)	319, 338, 686
MspI	CCGG	2 cut(s)	186, 260
MspR9I	CCNGG	4 cut(s)	187, 231, 236, 436
Mva1269I	GAATGC	3 cut(s)	261, 484, 652
MvaI	CCWGG	3 cut(s)	231, 236, 436
MwoI	GCNNNNNNNGC	3 cut(s)	286, 531, 601
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	244, 410, 440
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	4 cut(s)	122, 201, 478, 508
NlaIV	GGNNCC	2 cut(s)	228, 510
PagI	TCATGA	1 cut(s)	474
PasI	CCCWGGG	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	3 cut(s)	261, 484, 652
PdiI	GCCGGC	1 cut(s)	261
PdmI	GAANNNNTTC	2 cut(s)	345, 862
PfeI	GAWTC	2 cut(s)	215, 346
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	150, 318, 321
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	3 cut(s)	229, 234, 434
PspGI	CCWGG	3 cut(s)	229, 234, 434
PspN4I	GGNNCC	2 cut(s)	228, 510
PspPI	GGNCC	2 cut(s)	416, 452
PvuII	CAGCTG	2 cut(s)	319, 338
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	3 cut(s)	149, 317, 320
Sau3AI	GATC	3 cut(s)	244, 410, 440
Sau96I	GGNCC	2 cut(s)	416, 452
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	4 cut(s)	187, 231, 236, 436
SduI	GDGCHC	3 cut(s)	86, 242, 536
SfaNI	GCATC	2 cut(s)	433, 787
SfcI	CTRYAG	2 cut(s)	513, 554
SinI	GGWCC	2 cut(s)	416, 452
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	541
SsiI	CCGC	2 cut(s)	684, 872
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	185, 229, 234, 434
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	194, 634
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	140, 409
TasI	AATT	1 cut(s)	541
TfiI	GAWTC	2 cut(s)	215, 346
TscAI	CASTG	1 cut(s)	649
TseI	GCWGC	3 cut(s)	148, 316, 319
TspDTI	ATGAA	3 cut(s)	186, 491, 555
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	416, 452
XagI	CCTNNNNNAGG	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	345, 862
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.