AT1G18890

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
6522764 .. 6526075
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18890.1

Sequence Viewer

Length: 1638 bp
ATGGGTAACTGTAACGCCTGTGTAAGGCCAGACTCAAAAGAATCAAAACCATCTTCAAAGCCGAAAAAACCCAATCGAGATCGGAAATTAAACCCATTCGCCGGAGATTTCACCAGATCCCCAGCTCCAATACGTGTTCTCAAAGATGTAATCCCTATGAGCAATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGTGAATTAGGTCGAGGCGAATTCGGAATCACTTACCTCTGTACTGATCGTGAAACCCACGAAGCTTTAGCTTGCAAATCGATTTCAAAGCGAAAGCTTCGAACAGCTGTCGATATCGAAGACGTTCGTCGTGAGGTAGCGATTATGTCTACTTTACCTGAGCATCCAAACGTAGTTAAGCTTAAGGCTAGTTATGAGGATAACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAGCTTTTTGATCGGATTGTTGCTAGAGGACATTACACGGAGCGTGCTGCTGCAGCTGTTGCGAGAACGATTGCTGAGGTTGTGATGATGTGTCACTCTAATGGAGTTATGCATCGAGATTTGAAACCTGAGAATTTCTTGTTTGCTAATAAAAAGGAGAATTCTCCACTAAAGGCTATTGATTTTGGCTTGTCTGTGTTCTTCAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTCCGTATTATATGGCTCCAGAAGTGTTGAAGAGAGATTATGGACCAGGGGTTGATGTGTGGAGTGCCGGAGTTATTATCTATATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACTGAACAAGGTGTTGCTCTTGCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGGCCTCAGATATCAGAGAGTGCCAAGAGCCTTGTGAAGCAGATGTTGGATCCTGATCCGACTAAGCGGTTAACTGCTCAGCAAGTGTTAGCTCACCCATGGATACAGAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGAGATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTTCTTCGTGTAATTGCGGAGCACTTGTCTATTCAAGAGGTTGAAGTGATAAAGAACATGTTCTCACTGATGGATGATGACAAGGATGGTAAAATAACTTACCCGGAACTCAAAGCTGGGCTTCAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAAATGTTGATGGAAGTGGCGGATGTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGTAGCTGTGATAATTCACTTGCAGAAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTATGTTTTTCGACAAAGATGGAAGTACATACATTGAACTTGATGAGCTACGGGAAGCTTTAGCGGATGAGTTAGGCGAGCCAGACGCCAGTGTTCTAAGCGACATCATGCGTGAAGTTGACACTGACAAGGACGGACGTATAAACTATGATGAGTTTGTGACGATGATGAAAGCTGGAACTGACTGGAGAAAGGCATCGAGACAATATTCAAGAGAGAGGTTCAAAAGCTTAAGCATTAACTTGATGAAAGATGGGTCATTGCATCTCCATGACGCTCTCACTGGACAAACTGTTCCTGTTTAA

Protein Analysis

545

Amino Acids

61.46

Weight (kDa)

6.2

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 64 - 321 3.5e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 65 - 316 3.1e-26 Protein tyrosine and serine/threonine kinase
EF-hand_7 PF13499 367 - 429 7.1e-10 EF-hand domain pair
EF-hand_1 PF00036 369 - 395 1.6e-06 EF hand domain
EF-hand_7 PF13499 442 - 502 7.3e-13 EF-hand domain pair
EF-hand_8 PF13833 456 - 502 9.4e-07 EF-hand domain pair
EF-hand_1 PF00036 477 - 503 2.5e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015782)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18890 AT1G74740
fragaria_vesca FvH4_5g15720
malus_domestica MD06G1186000.v1.1 MD14G1192200.v1.1
prunus_persica Prupe.5G184800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0180391
rosa_laevigata RLG00000005271
rosa_multiflora Rmu_sc0003526.1_g000008
rosa_rugosa Rorug06G0432800
rosa_samantha Rh7AG033300 Rh7BG033200 Rh7CG035200 Rh7DG033700
rosa_wichuraiana Rw7G002780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 347
AciI CCGC 5 cut(s) 829, 925, 1073, 1235, 1397
AclWI GGATC 4 cut(s) 111, 902, 908, 915
AcsI RAATTY 3 cut(s) 218, 574, 601
AcuI CTGAAG 1 cut(s) 1163
AcyI GRCGYC 1 cut(s) 1419
AfaI GTAC 2 cut(s) 241, 1360
AfiI CCNNNNNNNGG 2 cut(s) 24, 101
AflII CTTAAG 2 cut(s) 380, 1564
AflIII ACRYGT 2 cut(s) 133, 1113
AjnI CCWGG 2 cut(s) 649, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AloI GAACNNNNNNTCC 1 cut(s) 1611
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 3 cut(s) 791, 846, 1528
AlwI GGATC 4 cut(s) 111, 902, 908, 915
AoxI GGCC 2 cut(s) 26, 860
ApeKI GCWGC 3 cut(s) 488, 491, 494
ApoI RAATTY 3 cut(s) 218, 574, 601
Asp700I GAANNNNTTC 4 cut(s) 321, 1025, 1043, 1115
AspS9I GGNCC 1 cut(s) 722
AsuC2I CCSGG 1 cut(s) 1160
AsuHPI GGTGA 4 cut(s) 103, 452, 944, 1214
AsuII TTCGAA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 722
BamHI GGATCC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 1080
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 475, 478, 506
BccI CCATC 7 cut(s) 58, 1120, 1136, 1219, 1238, 1346, 1580
BciT130I CCWGG 2 cut(s) 651, 726
BciVI GTATCC 1 cut(s) 954
BcnI CCSGG 1 cut(s) 1160
BcoDI GTCTC 3 cut(s) 791, 846, 1528
BfaI CTAG 4 cut(s) 387, 465, 1014, 1328
BfmI CTRYAG 1 cut(s) 492
BfrI CTTAAG 2 cut(s) 380, 1564
BfuI GTATCC 1 cut(s) 954
BglII AGATCT 1 cut(s) 1010
BisI GCNGC 3 cut(s) 489, 492, 495
BlpI GCTNAGC 1 cut(s) 936
BlsI GCNGC 3 cut(s) 490, 493, 496
Bme1390I CCNGG 3 cut(s) 651, 726, 1160
Bme18I GGWCC 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 722
BmiI GGNNCC 2 cut(s) 696, 909
BmrFI CCNGG 3 cut(s) 651, 726, 1160
BmsI GCATC 5 cut(s) 370, 421, 562, 1538, 1606
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 3 cut(s) 672, 681, 1540
Bpu10I CCTNAGC 2 cut(s) 357, 516
Bpu1102I GCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 1160
Bsa29I ATCGAT 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 912
BsaHI GRCGYC 1 cut(s) 1419
BsaI GGTCTC 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 725, 857, 956
BsaXI ACNNNNNCTCC 6 cut(s) 990, 1020, 1067, 1097, 1260, 1290
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 101
Bse1I ACTGG 3 cut(s) 1422, 1523, 1621
Bse3DI GCAATG 1 cut(s) 1592
Bse8I GATNNNNATC 1 cut(s) 912
BseBI CCWGG 2 cut(s) 651, 726
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 725, 857, 956
BseGI GGATG 5 cut(s) 361, 1135, 1147, 1243, 1405
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 2 cut(s) 24, 101
BseMI GCAATG 1 cut(s) 1592
BseMII CTCAG 7 cut(s) 185, 348, 507, 561, 786, 878, 950
BseNI ACTGG 3 cut(s) 1422, 1523, 1621
BseXI GCAGC 3 cut(s) 475, 478, 506
BseYI CCCAGC 2 cut(s) 121, 1172
BshFI GGCC 2 cut(s) 28, 862
BshVI ATCGAT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 1080
BsiSI CCGG 3 cut(s) 102, 747, 1160
BslI CCNNNNNNNGG 2 cut(s) 24, 101
BsmAI GTCTC 3 cut(s) 791, 846, 1528
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 2 cut(s) 28, 862
Bso31I GGTCTC 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 1080
Bsp1720I GCTNAGC 1 cut(s) 936
Bsp19I CCATGG 1 cut(s) 956
BspACI CCGC 5 cut(s) 829, 925, 1073, 1235, 1397
BspANI GGCC 2 cut(s) 28, 862
BspCNI CTCAG 7 cut(s) 184, 349, 508, 562, 787, 877, 949
BspDI ATCGAT 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 696, 909
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 4 cut(s) 111, 902, 908, 915
BspT104I TTCGAA 1 cut(s) 298
BspTI CTTAAG 2 cut(s) 380, 1564
BspTNI GGTCTC 1 cut(s) 846
BsrDI GCAATG 1 cut(s) 1592
BsrI ACTGG 3 cut(s) 1422, 1523, 1621
BssECI CCNNGG 3 cut(s) 725, 857, 956
BssNI GRCGYC 1 cut(s) 1419
BssT1I CCWWGG 2 cut(s) 857, 956
Bst2UI CCWGG 2 cut(s) 651, 726
Bst4CI ACNGT 2 cut(s) 11, 1627
Bst6I CTCTTC 1 cut(s) 704
BstACI GRCGYC 1 cut(s) 1419
BstAFI CTTAAG 2 cut(s) 380, 1564
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 271, 486, 1412
BstDSI CCRYGG 1 cut(s) 956
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 5 cut(s) 361, 1135, 1147, 1243, 1405
BstMAI GTCTC 3 cut(s) 791, 846, 1528
BstMWI GCNNNNNNNGC 3 cut(s) 494, 500, 977
BstNI CCWGG 2 cut(s) 651, 726
BstNSI RCATGY 1 cut(s) 1117
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 649, 724, 1158
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 475, 478, 506
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 3 cut(s) 116, 907, 1010
BstYI RGATCY 3 cut(s) 116, 907, 1010
Bsu15I ATCGAT 1 cut(s) 278
BsuI GTATCC 1 cut(s) 954
BsuRI GGCC 2 cut(s) 28, 862
BsuTUI ATCGAT 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 956
BtsCI GGATG 5 cut(s) 361, 1135, 1147, 1243, 1405
BtsIMutI CAGTG 4 cut(s) 1121, 1429, 1455, 1614
Cac8I GCNNGC 3 cut(s) 271, 486, 1412
Cfr13I GGNCC 1 cut(s) 722
ClaI ATCGAT 1 cut(s) 278
CseI GACGC 2 cut(s) 1427, 1616
Csp6I GTAC 2 cut(s) 240, 1359
CviAII CATG 4 cut(s) 957, 1114, 1441, 1604
CviQI GTAC 2 cut(s) 240, 1359
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
EciI GGCGGA 1 cut(s) 1250
Eco130I CCWWGG 2 cut(s) 857, 956
Eco31I GGTCTC 1 cut(s) 846
Eco32I GATATC 2 cut(s) 313, 870
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 1163
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoRI GAATTC 2 cut(s) 218, 601
EcoRII CCWGG 2 cut(s) 649, 724
EcoRV GATATC 2 cut(s) 313, 870
EcoT14I CCWWGG 2 cut(s) 857, 956
EcoT22I ATGCAT 1 cut(s) 555
ErhI CCWWGG 2 cut(s) 857, 956
FaeI CATG 4 cut(s) 960, 1117, 1444, 1607
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FatI CATG 4 cut(s) 956, 1113, 1440, 1603
FauI CCCGC 1 cut(s) 822
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 3 cut(s) 489, 492, 495
FokI GGATG 5 cut(s) 348, 1142, 1154, 1250, 1412
Fsp4HI GCNGC 3 cut(s) 489, 492, 495
FspBI CTAG 4 cut(s) 387, 465, 1014, 1328
GluI GCNGC 3 cut(s) 489, 492, 495
GsaI CCCAGC 2 cut(s) 125, 1176
GsuI CTGGAG 3 cut(s) 672, 681, 1540
HaeIII GGCC 2 cut(s) 28, 862
HapII CCGG 3 cut(s) 102, 747, 1160
HgaI GACGC 2 cut(s) 1427, 1616
Hin1I GRCGYC 1 cut(s) 1419
Hin1II CATG 4 cut(s) 960, 1117, 1444, 1607
HincII GTYRAC 2 cut(s) 930, 1453
HindII GTYRAC 2 cut(s) 930, 1453
HindIII AAGCTT 5 cut(s) 261, 293, 377, 1389, 1561
HinfI GANTC 4 cut(s) 32, 41, 225, 1044
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 3 cut(s) 102, 747, 1160
HphI GGTGA 4 cut(s) 103, 452, 944, 1214
Hpy166II GTNNAC 6 cut(s) 348, 663, 930, 1193, 1205, 1453
Hpy188I TCNGA 9 cut(s) 84, 174, 224, 456, 867, 874, 918, 1010, 1182
Hpy8I GTNNAC 6 cut(s) 348, 663, 930, 1193, 1205, 1453
Hpy99I CGWCG 1 cut(s) 330
HpyAV CCTTC 2 cut(s) 428, 1177
HpyCH4III ACNGT 2 cut(s) 11, 1627
HpyCH4IV ACGT 5 cut(s) 133, 321, 369, 408, 1471
HpyCH4V TGCA 7 cut(s) 273, 412, 494, 553, 971, 1297, 1597
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 500, 977
HpySE526I ACGT 5 cut(s) 133, 321, 369, 408, 1471
Hsp92I GRCGYC 1 cut(s) 1419
Hsp92II CATG 4 cut(s) 960, 1117, 1444, 1607
KspAI GTTAAC 1 cut(s) 930
LmnI GCTCC 6 cut(s) 130, 424, 481, 700, 985, 1075
Lsp1109I GCAGC 3 cut(s) 475, 478, 506
LweI GCATC 5 cut(s) 370, 421, 562, 1538, 1606
MaeI CTAG 4 cut(s) 387, 465, 1014, 1328
MaeII ACGT 5 cut(s) 133, 321, 369, 408, 1471
MaeIII GTNAC 4 cut(s) 5, 11, 533, 1492
MboII GAAGA 6 cut(s) 45, 329, 634, 721, 1052, 1312
MflI RGATCY 3 cut(s) 116, 907, 1010
MhlI GDGCHC 1 cut(s) 1080
MluCI AATT 7 cut(s) 86, 203, 218, 574, 601, 1068, 1287
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 885, 941
Mph1103I ATGCAT 1 cut(s) 555
MroXI GAANNNNTTC 4 cut(s) 321, 1025, 1043, 1115
MseI TTAA 8 cut(s) 89, 375, 381, 846, 929, 1565, 1572, 1636
MslI CAYNNNNRTG 2 cut(s) 540, 1602
MspA1I CMGCKG 2 cut(s) 305, 497
MspCI CTTAAG 2 cut(s) 380, 1564
MspI CCGG 3 cut(s) 102, 747, 1160
MspR9I CCNGG 3 cut(s) 651, 726, 1160
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 2 cut(s) 651, 726
MwoI GCNNNNNNNGC 3 cut(s) 494, 500, 977
NciI CCSGG 1 cut(s) 1160
NcoI CCATGG 1 cut(s) 956
NlaIII CATG 4 cut(s) 960, 1117, 1444, 1607
NlaIV GGNNCC 2 cut(s) 696, 909
NmuCI GTSAC 2 cut(s) 533, 1492
NsiI ATGCAT 1 cut(s) 555
NspI RCATGY 1 cut(s) 1117
NspV TTCGAA 1 cut(s) 298
PciI ACATGT 1 cut(s) 1113
PctI GAATGC 1 cut(s) 973
PdmI GAANNNNTTC 4 cut(s) 321, 1025, 1043, 1115
PfeI GAWTC 3 cut(s) 41, 225, 1044
PkrI GCNGC 3 cut(s) 490, 493, 496
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 134
PscI ACATGT 1 cut(s) 1113
PshAI GACNNNNGTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 649, 724
PspFI CCCAGC 2 cut(s) 121, 1172
PspGI CCWGG 2 cut(s) 649, 724
PspN4I GGNNCC 2 cut(s) 696, 909
PspPI GGNCC 1 cut(s) 722
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 3 cut(s) 116, 907, 1010
PvuII CAGCTG 2 cut(s) 305, 497
RsaI GTAC 2 cut(s) 241, 1360
RsaNI GTAC 2 cut(s) 240, 1359
RseI CAYNNNNRTG 2 cut(s) 540, 1602
SaqAI TTAA 8 cut(s) 89, 375, 381, 846, 929, 1565, 1572, 1636
SatI GCNGC 3 cut(s) 489, 492, 495
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 3 cut(s) 651, 726, 1160
SduI GDGCHC 1 cut(s) 1080
SfaNI GCATC 5 cut(s) 370, 421, 562, 1538, 1606
SfcI CTRYAG 1 cut(s) 492
SfuI TTCGAA 1 cut(s) 298
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 2 cut(s) 540, 1602
SmlI CTYRAG 2 cut(s) 380, 1564
SmoI CTYRAG 2 cut(s) 380, 1564
Sse9I AATT 7 cut(s) 86, 203, 218, 574, 601, 1068, 1287
SsiI CCGC 5 cut(s) 829, 925, 1073, 1235, 1397
SspI AATATT 1 cut(s) 1541
SspMI CTAG 4 cut(s) 387, 465, 1014, 1328
StyD4I CCNGG 3 cut(s) 649, 724, 1158
StyI CCWWGG 2 cut(s) 857, 956
TaaI ACNGT 2 cut(s) 11, 1627
TaiI ACGT 5 cut(s) 136, 324, 372, 411, 1474
TasI AATT 7 cut(s) 86, 203, 218, 574, 601, 1068, 1287
TatI WGTACW 2 cut(s) 239, 1358
TfiI GAWTC 3 cut(s) 41, 225, 1044
Tru1I TTAA 8 cut(s) 89, 375, 381, 846, 929, 1565, 1572, 1636
Tru9I TTAA 8 cut(s) 89, 375, 381, 846, 929, 1565, 1572, 1636
TscAI CASTG 4 cut(s) 1128, 1429, 1462, 1621
TseFI GTSAC 2 cut(s) 533, 1492
TseI GCWGC 3 cut(s) 488, 491, 494
Tsp45I GTSAC 2 cut(s) 533, 1492
TspDTI ATGAA 4 cut(s) 1052, 1329, 1517, 1595
TspGWI ACGGA 4 cut(s) 494, 672, 774, 1482
TspRI CASTG 4 cut(s) 1128, 1429, 1462, 1621
Vha464I CTTAAG 2 cut(s) 380, 1564
VpaK11BI GGWCC 1 cut(s) 722
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 3 cut(s) 218, 574, 601
XceI RCATGY 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 347
XmnI GAANNNNTTC 4 cut(s) 321, 1025, 1043, 1115
XspI CTAG 4 cut(s) 387, 465, 1014, 1328
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.