AT1G19600

carbohydrate kinase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015120
Physical Location & Seq
Forward (+)
6778887 .. 6781222
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19600.1

Sequence Viewer

Length: 1068 bp
ATGGTAGCTGAGGCCTTGCCCAAATGCCCTGAAGCTCCACTCGTACTTGGACTCCAACCCGCAGCTCTTATCGATAACGTCGCTCCTGTTGATTGGTCTTTACTCGATCAAATTCCCGGTGATCGCGGTGGCTCCATTGCCGTGCAAAAGGATGAGTTAGAGCACATGCTAAAAGAGCTTGATGCACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTGACCAATACAGTTCGAGGCTTGAGTGTTGGGTTCGGTGTAGCCACTGGGATTATTGGTGCTTATGGAGACGATGAACAAGGCCAATTGTTTGTTAGCAATATGGGTTTTAGTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGTCTCTCGAGTGCTGTGAAGATTCAGGCAGATGAATTAAGCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTTCTTAGATATGCTGTTCTTAATTTACAAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTAGTTTTGAGATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTGGTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAGGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGGTAACTTTAGGGTCGAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACATATATCAGCCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCCGGTGACCTATTCGCAAGCGGGTTTCTGTACGGACTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCAGTGGTGGATCTGTCATCCGTGCTCTCGGTGGAGAAGTAACCCCAGAAAACTGGCAATGGATGCACAAACAGTTGCAGTTGAAGGGCTTACCTGTTCCTGACATCCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

355

Amino Acids

37.84

Weight (kDa)

5.29

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 59 - 328 1.3e-35 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19600
fragaria_vesca FvH4_2g39580 FvH4_2g39580 FvH4_2g39580
malus_domestica MD08G1029000.v1.1 MD15G1024500.v1.1
prunus_persica Prupe.1G376800_v2.0.a1 Prupe.1G376800_v2.0.a1
pyrus_communis pycom08g02280
rosa_chinensis RchiOBHm_Chr6g0301341
rosa_laevigata RLG00000011259
rosa_multiflora Rmu_sc0013354.1_g000023
rosa_roxburghii Rroxscaffold_7G00166900
rosa_rugosa Rorug06G0303800
rosa_samantha Rh6AG417400
rosa_wichuraiana Rw6G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 727
AciI CCGC 4 cut(s) 60, 126, 722, 891
AclWI GGATC 2 cut(s) 955, 970
AcsI RAATTY 2 cut(s) 111, 619
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 3 cut(s) 45, 825, 902
AgsI TTSAA 2 cut(s) 545, 1036
AluBI AGCT 9 cut(s) 8, 35, 65, 178, 599, 634, 643, 700, 737
AluI AGCT 9 cut(s) 8, 35, 65, 178, 599, 634, 643, 700, 737
Alw21I GWGCWC 3 cut(s) 165, 702, 979
Alw26I GTCTC 3 cut(s) 291, 443, 839
AlwI GGATC 2 cut(s) 955, 970
AlwNI CAGNNNCTG 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 442
Aor13HI TCCGGA 1 cut(s) 727
AoxI GGCC 2 cut(s) 12, 310
ApeKI GCWGC 4 cut(s) 62, 548, 692, 734
ApoI RAATTY 2 cut(s) 111, 619
AspA2I CCTAGG 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 131, 722, 887
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 1 cut(s) 725
AvrII CCTAGG 1 cut(s) 748
AxyI CCTNAGG 1 cut(s) 704
BanII GRGCYC 1 cut(s) 702
Bbv12I GWGCWC 3 cut(s) 165, 702, 979
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 74, 560, 704, 746
BccI CCATC 3 cut(s) 208, 604, 759
BceAI ACGGC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 291, 443, 839
BfaI CTAG 2 cut(s) 600, 749
BglII AGATCT 1 cut(s) 664
BisI GCNGC 4 cut(s) 63, 549, 693, 735
BlnI CCTAGG 1 cut(s) 748
BlsI GCNGC 4 cut(s) 64, 550, 694, 736
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 5 cut(s) 133, 201, 379, 726, 871
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 3 cut(s) 172, 850, 1005
BmuI ACTGGG 1 cut(s) 285
BpmI CTGGAG 2 cut(s) 240, 668
Bpu10I CCTNAGC 2 cut(s) 9, 362
BpuEI CTTGAG 3 cut(s) 271, 340, 761
BpuMI CCSGG 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 588, 748
BsaWI WCCGGW 1 cut(s) 727
BsaXI ACNNNNNCTCC 6 cut(s) 36, 66, 213, 243, 834, 864
Bse118I RCCGGY 1 cut(s) 872
Bse1I ACTGG 2 cut(s) 280, 1010
Bse21I CCTNAGG 1 cut(s) 704
Bse3DI GCAATG 4 cut(s) 135, 757, 798, 1016
BseAI TCCGGA 1 cut(s) 727
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 588, 748
BseGI GGATG 4 cut(s) 157, 969, 1020, 1056
BseMI GCAATG 4 cut(s) 135, 757, 798, 1016
BseMII CTCAG 2 cut(s) 376, 401
BseNI ACTGG 2 cut(s) 280, 1010
BseXI GCAGC 4 cut(s) 74, 560, 704, 746
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 14, 312
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 3 cut(s) 165, 702, 979
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 3 cut(s) 117, 728, 873
BsmAI GTCTC 3 cut(s) 291, 443, 839
BsmBI CGTCTC 1 cut(s) 291
BsnI GGCC 2 cut(s) 14, 312
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 3 cut(s) 165, 702, 979
Bsp13I TCCGGA 1 cut(s) 727
Bsp143I GATC 5 cut(s) 106, 121, 664, 947, 962
BspACI CCGC 4 cut(s) 60, 126, 722, 891
BspANI GGCC 2 cut(s) 14, 312
BspCNI CTCAG 2 cut(s) 375, 400
BspDI ATCGAT 1 cut(s) 72
BspEI TCCGGA 1 cut(s) 727
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 5 cut(s) 133, 201, 379, 726, 871
BspPI GGATC 2 cut(s) 955, 970
BsrDI GCAATG 4 cut(s) 135, 757, 798, 1016
BsrFI RCCGGY 1 cut(s) 872
BsrI ACTGG 2 cut(s) 280, 1010
BssAI RCCGGY 1 cut(s) 872
BssECI CCNNGG 2 cut(s) 588, 748
BssMI GATC 5 cut(s) 106, 121, 664, 947, 962
BssT1I CCWWGG 2 cut(s) 588, 748
Bst4CI ACNGT 3 cut(s) 241, 850, 1026
BstAPI GCANNNNNTGC 3 cut(s) 759, 860, 1015
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 6 cut(s) 9, 362, 387, 498, 512, 704
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 4 cut(s) 157, 969, 1020, 1056
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 5 cut(s) 109, 124, 667, 950, 965
BstMAI GTCTC 3 cut(s) 291, 443, 839
BstMBI GATC 5 cut(s) 106, 121, 664, 947, 962
BstMWI GCNNNNNNNGC 6 cut(s) 175, 640, 759, 860, 869, 1015
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 74, 560, 704, 746
BstX2I RGATCY 2 cut(s) 664, 962
BstXI CCANNNNNNTGG 1 cut(s) 1005
BstYI RGATCY 2 cut(s) 664, 962
Bsu15I ATCGAT 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 704
BsuRI GGCC 2 cut(s) 14, 312
BsuTUI ATCGAT 1 cut(s) 72
BtsCI GGATG 4 cut(s) 157, 969, 1020, 1056
BtsI GCAGTG 2 cut(s) 381, 961
BtsIMutI CAGTG 5 cut(s) 199, 273, 381, 395, 961
Cac8I GCNNGC 1 cut(s) 889
CaiI CAGNNNCTG 1 cut(s) 646
Cfr10I RCCGGY 1 cut(s) 872
Cfr13I GGNCC 1 cut(s) 725
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 44, 824, 901
CviAII CATG 4 cut(s) 166, 435, 809, 951
CviQI GTAC 3 cut(s) 44, 824, 901
DdeI CTNAG 6 cut(s) 9, 362, 387, 498, 512, 704
DpnI GATC 5 cut(s) 108, 123, 666, 949, 964
DpnII GATC 5 cut(s) 106, 121, 664, 947, 962
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 2 cut(s) 588, 748
Eco147I AGGCCT 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 725
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 704
Eco88I CYCGRG 1 cut(s) 442
Eco91I GGTNACC 1 cut(s) 875
EcoICRI GAGCTC 1 cut(s) 700
EcoO65I GGTNACC 1 cut(s) 875
EcoRI GAATTC 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 588, 748
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 588, 748
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 4 cut(s) 169, 438, 812, 954
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FatI CATG 4 cut(s) 165, 434, 808, 950
FauI CCCGC 3 cut(s) 67, 715, 884
Fnu4HI GCNGC 4 cut(s) 63, 549, 693, 735
FokI GGATG 4 cut(s) 164, 956, 1027, 1043
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 4 cut(s) 63, 549, 693, 735
FspBI CTAG 2 cut(s) 600, 749
GluI GCNGC 4 cut(s) 63, 549, 693, 735
GsuI CTGGAG 2 cut(s) 240, 668
HaeIII GGCC 2 cut(s) 14, 312
HapII CCGG 3 cut(s) 117, 728, 873
Hin1II CATG 4 cut(s) 169, 438, 812, 954
HinfI GANTC 4 cut(s) 51, 410, 457, 650
HpaII CCGG 3 cut(s) 117, 728, 873
HphI GGTGA 3 cut(s) 131, 722, 887
Hpy188I TCNGA 1 cut(s) 631
Hpy188III TCNNGA 7 cut(s) 364, 442, 616, 647, 728, 740, 1052
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 566, 1030
HpyCH4III ACNGT 3 cut(s) 241, 850, 1026
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 9 cut(s) 145, 185, 762, 798, 803, 939, 954, 1018, 1030
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 640, 759, 860, 869, 1015
HpyF3I CTNAG 6 cut(s) 9, 362, 387, 498, 512, 704
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 4 cut(s) 169, 438, 812, 954
Kpn2I TCCGGA 1 cut(s) 727
Kzo9I GATC 5 cut(s) 106, 121, 664, 947, 962
LmnI GCTCC 6 cut(s) 40, 88, 137, 205, 705, 869
Lsp1109I GCAGC 4 cut(s) 74, 560, 704, 746
LweI GCATC 3 cut(s) 172, 850, 1005
MaeI CTAG 2 cut(s) 600, 749
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 5 cut(s) 229, 656, 775, 875, 991
MalI GATC 5 cut(s) 108, 123, 666, 949, 964
MboI GATC 5 cut(s) 106, 121, 664, 947, 962
MboII GAAGA 6 cut(s) 223, 379, 382, 466, 494, 941
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 2 cut(s) 664, 962
MhlI GDGCHC 3 cut(s) 165, 702, 979
MluCI AATT 6 cut(s) 111, 314, 470, 529, 540, 619
MlyI GAGTC 3 cut(s) 45, 404, 659
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 4, 215, 239, 676, 724, 811
MroI TCCGGA 1 cut(s) 727
MseI TTAA 3 cut(s) 206, 473, 528
MslI CAYNNNNRTG 2 cut(s) 140, 192
MspI CCGG 3 cut(s) 117, 728, 873
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 314
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 6 cut(s) 175, 640, 759, 860, 869, 1015
NciI CCSGG 1 cut(s) 117
NdeII GATC 5 cut(s) 106, 121, 664, 947, 962
NlaIII CATG 4 cut(s) 169, 438, 812, 954
NlaIV GGNNCC 5 cut(s) 133, 201, 379, 726, 871
NmuCI GTSAC 2 cut(s) 229, 875
NspI RCATGY 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 442
PceI AGGCCT 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PfeI GAWTC 1 cut(s) 457
PflFI GACNNNGTC 1 cut(s) 435
PkrI GCNGC 4 cut(s) 64, 550, 694, 736
PleI GAGTC 3 cut(s) 45, 404, 658
PpsI GAGTC 3 cut(s) 45, 404, 658
Psp124BI GAGCTC 1 cut(s) 702
PspEI GGTNACC 1 cut(s) 875
PspN4I GGNNCC 5 cut(s) 133, 201, 379, 726, 871
PspPI GGNCC 1 cut(s) 725
PstNI CAGNNNCTG 1 cut(s) 646
PsuI RGATCY 2 cut(s) 664, 962
PsyI GACNNNGTC 1 cut(s) 435
RsaI GTAC 3 cut(s) 45, 825, 902
RsaNI GTAC 3 cut(s) 44, 824, 901
RseI CAYNNNNRTG 2 cut(s) 140, 192
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 3 cut(s) 206, 473, 528
SatI GCNGC 4 cut(s) 63, 549, 693, 735
Sau3AI GATC 5 cut(s) 106, 121, 664, 947, 962
Sau96I GGNCC 1 cut(s) 725
SchI GAGTC 3 cut(s) 45, 404, 659
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 3 cut(s) 165, 702, 979
SfaNI GCATC 3 cut(s) 172, 850, 1005
Sfr274I CTCGAG 1 cut(s) 442
SinI GGWCC 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 140, 192
SmlI CTYRAG 4 cut(s) 250, 355, 442, 740
SmoI CTYRAG 4 cut(s) 250, 355, 442, 740
Sse9I AATT 6 cut(s) 111, 314, 470, 529, 540, 619
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 4 cut(s) 60, 126, 722, 891
SspMI CTAG 2 cut(s) 600, 749
SstI GAGCTC 1 cut(s) 702
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 2 cut(s) 588, 748
TaaI ACNGT 3 cut(s) 241, 850, 1026
TaiI ACGT 1 cut(s) 81
TaqI TCGA 8 cut(s) 72, 105, 244, 421, 443, 556, 637, 788
TasI AATT 6 cut(s) 111, 314, 470, 529, 540, 619
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 206, 473, 528
Tru9I TTAA 3 cut(s) 206, 473, 528
TscAI CASTG 5 cut(s) 199, 280, 388, 395, 961
TseFI GTSAC 2 cut(s) 229, 875
TseI GCWGC 4 cut(s) 62, 548, 692, 734
Tsp45I GTSAC 2 cut(s) 229, 875
TspDTI ATGAA 2 cut(s) 318, 483
TspGWI ACGGA 2 cut(s) 918, 962
TspRI CASTG 5 cut(s) 199, 280, 388, 395, 961
Tth111I GACNNNGTC 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 2 cut(s) 111, 619
XceI RCATGY 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 442
XmaJI CCTAGG 1 cut(s) 748
XspI CTAG 2 cut(s) 600, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.