Rroxscaffold_7G00166900

Adenosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015120
Physical Location & Seq
Reverse (-)
8246633 .. 8249575
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166900.1

Sequence Viewer

Length: 1020 bp
ATGGGAGCAGAAGCCACCTTAGTCCCCAACTCCGACAGCGGCGAGGCTCCTCTGGTTCTGGGACTTCAAGCCGCCGCCCTCATCGATCACGTGGCTCGCGTAGACTGGTCCTTGCTCGACCAACTCCCCGGCGAGCGCGGTGGCTCCAGCCCCGTTGCAATTGAAGAGCTTGAGCGTATATTGAAAGAGGTGAAGACCCATGTTATATCATCCCCTGATGAATCTCTGCCTATGAAAACCATGGCTGGTGGGAGTGTGGCCAATACTATTAGAGGGTTGAGCGCAGGGTTTGGAGTCTCTTGTGGGATCATTGGTGCATGTGGGGATGATGAGCAAGGCCAGTTGTTTGTTAGTAACATGAGCTCTCATGCTGTGAACCTTGAGAGGTTGAGGATGAAGAAGGGATCCACAGCTCAGTGTGTTTGCTTGGTTGATGAGTCTGGCAATCGGACAATGCGTCCATGTCTCTCTAGTGCTGTGAAGCTTCACCCAAAGGAGGATGACTTGACAAGGGCAGATTTTAAAGGATGTAAGTGGTTGTTGATGAGGTACGGCATAATTAACATTGAAGTGATTCAGGCAGCTATAAAGGTCGCCAAACAAGAGGGTCTTCTTGTGTCCTTGGATTTGGCCAGCTTTGAGATGGTTCGCAACTATAAATCACCTCTTCTACAGTTGCTGGAGTCGGGGAACATAGACCTCTGCTTTGCCAATGGGGATGAAGCAACAGAGCTGCTAAGTAATGGATGCATTGCAAAGCACGGAAAAGAGATTGTGAGAGTTCCAGCCATTGGGGAAGCCAATGCAATAGATGCCACAGGAGCAGGCGACTTGTTTGCCGGTGGGTTTTTGTACGGGTTGGTGAAGGGATTATCTCTAGAGGAATGCTGCAAAGCTGGCTCATGCAGTGGGGGGACAGTTATTCGCTCTCTCGGTGGTGAGGTGCCACCTGAGAGTTGGCAATGGATGTACAAGCAGATGCAGATCAAGGGCCTCCCTCTTCCGGACATCCAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

339

Amino Acids

36.0

Weight (kDa)

5.12

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 79 - 246 2.9e-10 pfkB family carbohydrate kinase
PfkB PF00294 248 - 315 4.9e-16 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19600
fragaria_vesca FvH4_2g39580 FvH4_2g39580 FvH4_2g39580
malus_domestica MD08G1029000.v1.1 MD15G1024500.v1.1
prunus_persica Prupe.1G376800_v2.0.a1 Prupe.1G376800_v2.0.a1
pyrus_communis pycom08g02280
rosa_chinensis RchiOBHm_Chr6g0301341
rosa_laevigata RLG00000011259
rosa_multiflora Rmu_sc0013354.1_g000023
rosa_roxburghii Rroxscaffold_7G00166900
rosa_rugosa Rorug06G0303800
rosa_samantha Rh6AG417400
rosa_wichuraiana Rw6G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 943
AccB7I CCANNNNNTGG 1 cut(s) 791
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 99, 138
AccIII TCCGGA 1 cut(s) 1003
AciI CCGC 4 cut(s) 39, 72, 75, 138
AclWI GGATC 3 cut(s) 314, 399, 412
AcoI YGGCCR 2 cut(s) 258, 630
AcvI CACGTG 1 cut(s) 91
AfaI GTAC 3 cut(s) 551, 854, 971
AfiI CCNNNNNNNGG 3 cut(s) 496, 791, 1003
AgsI TTSAA 4 cut(s) 68, 164, 184, 569
AhdI GACNNNNNGTC 1 cut(s) 456
AluBI AGCT 8 cut(s) 169, 363, 413, 484, 584, 636, 733, 896
AluI AGCT 8 cut(s) 169, 363, 413, 484, 584, 636, 733, 896
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 2 cut(s) 301, 470
AlwI GGATC 3 cut(s) 314, 399, 412
AlwNI CAGNNNCTG 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 1003
AoxI GGCC 4 cut(s) 258, 337, 630, 991
ApeKI GCWGC 3 cut(s) 581, 733, 888
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 2 cut(s) 138, 284
AspS9I GGNCC 2 cut(s) 108, 991
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 5 cut(s) 202, 479, 654, 874, 950
AvaII GGWCC 1 cut(s) 108
BalI TGGCCA 2 cut(s) 260, 632
BamHI GGATCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 200, 602
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 593, 720, 875
BccI CCATC 1 cut(s) 637
BceAI ACGGC 1 cut(s) 568
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 301, 470
BfaI CTAG 2 cut(s) 471, 878
BfmI CTRYAG 1 cut(s) 671
BisI GCNGC 6 cut(s) 40, 72, 75, 582, 734, 889
BlsI GCNGC 6 cut(s) 41, 73, 76, 583, 735, 890
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 108
BmeRI GACNNNNNGTC 1 cut(s) 456
BmgT120I GGNCC 2 cut(s) 108, 991
BmiI GGNNCC 4 cut(s) 48, 145, 406, 945
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 3 cut(s) 737, 802, 969
BpiI GAAGAC 2 cut(s) 200, 602
BpmI CTGGAG 2 cut(s) 130, 701
BpuEI CTTGAG 2 cut(s) 191, 401
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 983
BsaJI CCNNGG 3 cut(s) 127, 240, 621
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 791, 1003
Bse118I RCCGGY 1 cut(s) 839
Bse1I ACTGG 2 cut(s) 110, 340
Bse3DI GCAATG 2 cut(s) 750, 968
Bse8I GATNNNNATC 1 cut(s) 983
BseAI TCCGGA 1 cut(s) 1003
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 3 cut(s) 127, 240, 621
BseGI GGATG 9 cut(s) 209, 331, 399, 505, 533, 724, 752, 972, 1008
BseJI GATNNNNATC 1 cut(s) 983
BseLI CCNNNNNNNGG 3 cut(s) 496, 791, 1003
BseMI GCAATG 2 cut(s) 750, 968
BseMII CTCAG 2 cut(s) 428, 942
BseNI ACTGG 2 cut(s) 110, 340
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 593, 720, 875
Bsh1236I CGCG 2 cut(s) 99, 138
BshFI GGCC 4 cut(s) 260, 339, 632, 993
BshNI GGYRCC 1 cut(s) 943
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 3 cut(s) 129, 840, 1004
BslFI GGGAC 3 cut(s) 8, 75, 928
BslI CCNNNNNNNGG 3 cut(s) 496, 791, 1003
BsmAI GTCTC 2 cut(s) 301, 470
BsmFI GGGAC 3 cut(s) 8, 75, 928
BsmI GAATGC 1 cut(s) 890
BsnI GGCC 4 cut(s) 260, 339, 632, 993
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 1003
Bsp1407I TGTACA 1 cut(s) 969
Bsp143I GATC 4 cut(s) 85, 306, 404, 984
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 4 cut(s) 39, 72, 75, 138
BspANI GGCC 4 cut(s) 260, 339, 632, 993
BspCNI CTCAG 2 cut(s) 427, 943
BspDI ATCGAT 1 cut(s) 84
BspEI TCCGGA 1 cut(s) 1003
BspFNI CGCG 2 cut(s) 99, 138
BspLI GGNNCC 4 cut(s) 48, 145, 406, 945
BspPI GGATC 3 cut(s) 314, 399, 412
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 943
BsrDI GCAATG 2 cut(s) 750, 968
BsrFI RCCGGY 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 969
BsrI ACTGG 2 cut(s) 110, 340
BssAI RCCGGY 1 cut(s) 839
BssECI CCNNGG 3 cut(s) 127, 240, 621
BssMI GATC 4 cut(s) 85, 306, 404, 984
BssT1I CCWWGG 2 cut(s) 240, 621
Bst4CI ACNGT 2 cut(s) 675, 919
Bst6I CTCTTC 3 cut(s) 159, 672, 1005
BstAPI GCANNNNNTGC 1 cut(s) 812
BstAUI TGTACA 1 cut(s) 969
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 5 cut(s) 97, 134, 634, 826, 898
BstDEI CTNAG 4 cut(s) 19, 414, 737, 951
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 9 cut(s) 209, 331, 399, 505, 533, 724, 752, 972, 1008
BstFNI CGCG 2 cut(s) 99, 138
BstHHI GCGC 2 cut(s) 138, 284
BstKTI GATC 4 cut(s) 88, 309, 407, 987
BstMAI GTCTC 2 cut(s) 301, 470
BstMBI GATC 4 cut(s) 85, 306, 404, 984
BstMWI GCNNNNNNNGC 3 cut(s) 812, 821, 897
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 671
BstUI CGCG 2 cut(s) 99, 138
BstV1I GCAGC 3 cut(s) 593, 720, 875
BstV2I GAAGAC 2 cut(s) 200, 602
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 4 cut(s) 260, 339, 632, 993
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 9 cut(s) 209, 331, 399, 505, 533, 724, 752, 972, 1008
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 2 cut(s) 422, 913
Cac8I GCNNGC 5 cut(s) 97, 134, 634, 826, 898
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 2 cut(s) 138, 284
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 2 cut(s) 108, 991
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 550, 853, 970
CviAII CATG 7 cut(s) 200, 241, 318, 358, 368, 462, 903
CviQI GTAC 3 cut(s) 550, 853, 970
DdeI CTNAG 4 cut(s) 19, 414, 737, 951
DpnI GATC 4 cut(s) 87, 308, 406, 986
DpnII GATC 4 cut(s) 85, 306, 404, 984
DraI TTTAAA 1 cut(s) 523
DriI GACNNNNNGTC 1 cut(s) 456
EaeI YGGCCR 2 cut(s) 258, 630
Eam1104I CTCTTC 3 cut(s) 159, 672, 1005
Eam1105I GACNNNNNGTC 1 cut(s) 456
EarI CTCTTC 3 cut(s) 159, 672, 1005
Ecl136II GAGCTC 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 240, 621
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 363
Eco72I CACGTG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 991
EcoT14I CCWWGG 2 cut(s) 240, 621
EcoT22I ATGCAT 1 cut(s) 752
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 2 cut(s) 240, 621
FaeI CATG 7 cut(s) 203, 244, 321, 361, 371, 465, 906
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 3 cut(s) 8, 75, 928
FatI CATG 7 cut(s) 199, 240, 317, 357, 367, 461, 902
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 6 cut(s) 40, 72, 75, 582, 734, 889
FokI GGATG 9 cut(s) 196, 338, 406, 512, 540, 731, 759, 979, 995
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 6 cut(s) 40, 72, 75, 582, 734, 889
FspBI CTAG 2 cut(s) 471, 878
GlaI GCGC 2 cut(s) 137, 283
GluI GCNGC 6 cut(s) 40, 72, 75, 582, 734, 889
GsuI CTGGAG 2 cut(s) 130, 701
HaeIII GGCC 4 cut(s) 260, 339, 632, 993
HapII CCGG 3 cut(s) 129, 840, 1004
HgaI GACGC 1 cut(s) 446
HhaI GCGC 2 cut(s) 138, 284
Hin1II CATG 7 cut(s) 203, 244, 321, 361, 371, 465, 906
Hin6I GCGC 2 cut(s) 136, 282
HinP1I GCGC 2 cut(s) 136, 282
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 5 cut(s) 221, 294, 437, 574, 683
HpaII CCGG 3 cut(s) 129, 840, 1004
HphI GGTGA 5 cut(s) 202, 479, 654, 874, 950
Hpy166II GTNNAC 2 cut(s) 103, 376
Hpy188I TCNGA 2 cut(s) 34, 450
Hpy188III TCNNGA 2 cut(s) 878, 1004
Hpy8I GTNNAC 2 cut(s) 103, 376
HpyAV CCTTC 2 cut(s) 394, 859
HpyCH4III ACNGT 2 cut(s) 675, 919
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 8 cut(s) 158, 317, 750, 755, 806, 891, 906, 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 812, 821, 897
HpyF3I CTNAG 4 cut(s) 19, 414, 737, 951
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 7 cut(s) 203, 244, 321, 361, 371, 465, 906
HspAI GCGC 2 cut(s) 136, 282
Kpn2I TCCGGA 1 cut(s) 1003
Kzo9I GATC 4 cut(s) 85, 306, 404, 984
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 4 cut(s) 5, 52, 149, 821
Lsp1109I GCAGC 3 cut(s) 593, 720, 875
LweI GCATC 3 cut(s) 737, 802, 969
MaeI CTAG 2 cut(s) 471, 878
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 353
MalI GATC 4 cut(s) 87, 308, 406, 986
MboI GATC 4 cut(s) 85, 306, 404, 984
MboII GAAGA 6 cut(s) 176, 205, 409, 602, 659, 992
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 2 cut(s) 260, 632
MluCI AATT 2 cut(s) 159, 558
MluNI TGGCCA 2 cut(s) 260, 632
MlyI GAGTC 3 cut(s) 303, 446, 692
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 2 cut(s) 260, 632
Mph1103I ATGCAT 1 cut(s) 752
MroI TCCGGA 1 cut(s) 1003
MroXI GAANNNNTTC 1 cut(s) 573
MscI TGGCCA 2 cut(s) 260, 632
MseI TTAA 2 cut(s) 522, 561
MslI CAYNNNNRTG 1 cut(s) 569
Msp20I TGGCCA 2 cut(s) 260, 632
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 3 cut(s) 129, 840, 1004
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 890
MvnI CGCG 2 cut(s) 99, 138
MwoI GCNNNNNNNGC 3 cut(s) 812, 821, 897
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 85, 306, 404, 984
NlaIII CATG 7 cut(s) 203, 244, 321, 361, 371, 465, 906
NlaIV GGNNCC 4 cut(s) 48, 145, 406, 945
NsiI ATGCAT 1 cut(s) 752
NspI RCATGY 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 454
PctI GAATGC 1 cut(s) 890
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 2 cut(s) 221, 574
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 6 cut(s) 41, 73, 76, 583, 735, 890
PleI GAGTC 3 cut(s) 302, 445, 691
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 3 cut(s) 302, 445, 691
Ppu21I YACGTR 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 365
PspCI CACGTG 1 cut(s) 91
PspN4I GGNNCC 4 cut(s) 48, 145, 406, 945
PspPI GGNCC 2 cut(s) 108, 991
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 3 cut(s) 551, 854, 971
RsaNI GTAC 3 cut(s) 550, 853, 970
RseI CAYNNNNRTG 1 cut(s) 569
SacI GAGCTC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 522, 561
SatI GCNGC 6 cut(s) 40, 72, 75, 582, 734, 889
Sau3AI GATC 4 cut(s) 85, 306, 404, 984
Sau96I GGNCC 2 cut(s) 108, 991
SchI GAGTC 3 cut(s) 303, 446, 692
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 365
SfaNI GCATC 3 cut(s) 737, 802, 969
SfcI CTRYAG 1 cut(s) 671
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 170, 380
SmoI CTYRAG 2 cut(s) 170, 380
Sse9I AATT 2 cut(s) 159, 558
SsiI CCGC 4 cut(s) 39, 72, 75, 138
SspMI CTAG 2 cut(s) 471, 878
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 2 cut(s) 240, 621
TaaI ACNGT 2 cut(s) 675, 919
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 84, 117
TasI AATT 2 cut(s) 159, 558
TatI WGTACW 1 cut(s) 969
TauI GCSGC 3 cut(s) 42, 74, 77
TfiI GAWTC 2 cut(s) 221, 574
Tru1I TTAA 2 cut(s) 522, 561
Tru9I TTAA 2 cut(s) 522, 561
TscAI CASTG 2 cut(s) 422, 913
TseI GCWGC 3 cut(s) 581, 733, 888
TspDTI ATGAA 4 cut(s) 234, 248, 410, 735
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 2 cut(s) 422, 913
Van91I CCANNNNNTGG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 877
XceI RCATGY 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 2 cut(s) 640, 954
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 2 cut(s) 471, 878
Zsp2I ATGCAT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.