Rh6AG417400

Adenosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015120
Physical Location & Seq
Forward (+)
61157878 .. 61160335
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG417400.1

Sequence Viewer

Length: 1116 bp
ATGGGAGCAGTAGCGACCTTAGTCACCACCACCAACTCCAACAGCGGCGAGGCTCCTCTGGTTCTGGGACTTCAAGCCGCCGCCCTCATTGATCACGTGGCTCGAGTAGACTGGTCCTTGCTCGACCAACTCCCCGGCGAGCGCGGTGGCTCCATCCCCGTTGCAATTGAAGAGCTTGAGCATATATTGAAAGAGGTGAAGACCCATGTTATATCATCCCCTGATGAATCTCTGCCTATGAAAACCATGGCTGGTGGGAGTGTGGCCAATACTATTAGAGGGTTGAGTGCAGGGTTTGGAGTCTCCTGTGGGATCATTGGTGCATGTGGGGATGATGAGCAAGGCCAGTTGTTTGTTAGTAACATGAGCTCTCATGCTGTGAACCTTGAGAGGTTGAGGATGAAGAAGGGATCCACAGCTCAGTGTGTTTGCTTGGTTGATGAGTCTGGCAATCGGACAATGCGTCCATGTCTCTCTAGTGCTGTGAAGCTTCACCCAAAGGAGGATGACTTGACAAGGGCAGATTTTAAAGGATGTAAATGGTTGTTGATGAGGTACGGCATATTTAACATTGAAGTGATTCAGGCAGCTATAAAGGTCGCCAAACAAGAGGGTCTTCTTGTGTCCTTGGATTTGGCCAGCTTTGAGATGGTTCGCAACTATAAATCACCTCTTCTACAGTTGCTGGAGTCGGGGAACATAGACCTCTGCTTTGCCAATGAGGATGAAGCAACAGAGCTGCTAAGAGGTCGTAATGGTGAACATGATGCTGACCCTGAGGCTGCACTTGAATTTTTGGGGAAACACTGCCAGTGGGCAGTGGTAACATTAGGCAGTAATGGATGCATTGCAAAGCATGGAAAAGAGATTGTGAGAGTTCCAGCCATTGGGGAAGCCAATGCAATAGATGCCACAGGAGCAGGCGACTTGTTTGCCGGTGGGTTTTTGTACGGATTGGTGAAGGGATTATCTCTAGAGGAATGCTGCAAAGTTGGCTCATGCAGTGGGGGAACAGTTATTCGCTCTCTCGGTGGTGAGGTGCCACCTGAGAGTTGGCAATGGATGTACAAGCAGATGCAGATCAAGGGCCTCCCTCTTCCGGACATCCAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

371

Amino Acids

39.57

Weight (kDa)

5.21

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 81 - 347 9.9e-40 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19600
fragaria_vesca FvH4_2g39580 FvH4_2g39580 FvH4_2g39580
malus_domestica MD08G1029000.v1.1 MD15G1024500.v1.1
prunus_persica Prupe.1G376800_v2.0.a1 Prupe.1G376800_v2.0.a1
pyrus_communis pycom08g02280
rosa_chinensis RchiOBHm_Chr6g0301341
rosa_laevigata RLG00000011259
rosa_multiflora Rmu_sc0013354.1_g000023
rosa_roxburghii Rroxscaffold_7G00166900
rosa_rugosa Rorug06G0303800
rosa_samantha Rh6AG417400
rosa_wichuraiana Rw6G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 887
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 1099
AciI CCGC 4 cut(s) 45, 78, 81, 144
AclWI GGATC 3 cut(s) 320, 405, 418
AcoI YGGCCR 2 cut(s) 264, 636
AcsI RAATTY 1 cut(s) 791
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 3 cut(s) 557, 950, 1067
AfiI CCNNNNNNNGG 3 cut(s) 502, 887, 1099
AgsI TTSAA 5 cut(s) 74, 170, 190, 575, 791
AhdI GACNNNNNGTC 1 cut(s) 462
AluBI AGCT 7 cut(s) 175, 369, 419, 490, 590, 642, 739
AluI AGCT 7 cut(s) 175, 369, 419, 490, 590, 642, 739
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 307, 476
AlwI GGATC 3 cut(s) 320, 405, 418
AlwNI CAGNNNCTG 1 cut(s) 685
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 1099
AoxI GGCC 4 cut(s) 264, 343, 636, 1087
ApeKI GCWGC 4 cut(s) 587, 739, 782, 984
ApoI RAATTY 1 cut(s) 791
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
Asp700I GAANNNNTTC 1 cut(s) 579
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 114, 1087
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 7 cut(s) 16, 208, 485, 660, 770, 970, 1046
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 777
BalI TGGCCA 2 cut(s) 266, 638
BamHI GGATCC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 1039
BanII GRGCYC 1 cut(s) 371
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 2 cut(s) 206, 608
Bbv12I GWGCWC 1 cut(s) 371
BbvI GCAGC 4 cut(s) 599, 726, 769, 971
BccI CCATC 2 cut(s) 161, 643
BceAI ACGGC 1 cut(s) 574
BcgI CGANNNNNNTGC 2 cut(s) 914, 948
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 307, 476
BfaI CTAG 2 cut(s) 477, 974
BfmI CTRYAG 1 cut(s) 677
BisI GCNGC 7 cut(s) 46, 78, 81, 588, 740, 783, 985
BlsI GCNGC 7 cut(s) 47, 79, 82, 589, 741, 784, 986
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 114
BmeRI GACNNNNNGTC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 114, 1087
BmiI GGNNCC 4 cut(s) 54, 151, 412, 1041
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 4 cut(s) 757, 833, 898, 1065
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 206, 608
BpmI CTGGAG 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 197, 407
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 1079
BsaJI CCNNGG 3 cut(s) 133, 246, 627
BsaWI WCCGGW 1 cut(s) 1099
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 887, 1099
Bse118I RCCGGY 1 cut(s) 935
Bse1I ACTGG 3 cut(s) 116, 346, 811
Bse21I CCTNAGG 1 cut(s) 777
Bse3DI GCAATG 2 cut(s) 846, 1064
Bse8I GATNNNNATC 1 cut(s) 1079
BseAI TCCGGA 1 cut(s) 1099
BseDI CCNNGG 3 cut(s) 133, 246, 627
BseJI GATNNNNATC 1 cut(s) 1079
BseLI CCNNNNNNNGG 3 cut(s) 502, 887, 1099
BseMI GCAATG 2 cut(s) 846, 1064
BseMII CTCAG 3 cut(s) 434, 768, 1038
BseNI ACTGG 3 cut(s) 116, 346, 811
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 599, 726, 769, 971
BsgI GTGCAG 2 cut(s) 309, 768
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 266, 345, 638, 1089
BshNI GGYRCC 1 cut(s) 1039
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 3 cut(s) 135, 936, 1100
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 502, 887, 1099
BsmAI GTCTC 2 cut(s) 307, 476
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 4 cut(s) 266, 345, 638, 1089
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 1099
Bsp1407I TGTACA 1 cut(s) 1065
Bsp143I GATC 4 cut(s) 91, 312, 410, 1080
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 4 cut(s) 45, 78, 81, 144
BspANI GGCC 4 cut(s) 266, 345, 638, 1089
BspCNI CTCAG 3 cut(s) 433, 769, 1039
BspEI TCCGGA 1 cut(s) 1099
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 4 cut(s) 54, 151, 412, 1041
BspPI GGATC 3 cut(s) 320, 405, 418
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 1039
BsrDI GCAATG 2 cut(s) 846, 1064
BsrFI RCCGGY 1 cut(s) 935
BsrGI TGTACA 1 cut(s) 1065
BsrI ACTGG 3 cut(s) 116, 346, 811
BssAI RCCGGY 1 cut(s) 935
BssECI CCNNGG 3 cut(s) 133, 246, 627
BssMI GATC 4 cut(s) 91, 312, 410, 1080
BssT1I CCWWGG 2 cut(s) 246, 627
Bst4CI ACNGT 2 cut(s) 681, 1015
Bst6I CTCTTC 3 cut(s) 165, 678, 1101
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 1 cut(s) 1065
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 140, 640, 922
BstDEI CTNAG 5 cut(s) 19, 420, 743, 777, 1047
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 4 cut(s) 94, 315, 413, 1083
BstMAI GTCTC 2 cut(s) 307, 476
BstMBI GATC 4 cut(s) 91, 312, 410, 1080
BstMWI GCNNNNNNNGC 3 cut(s) 908, 917, 993
BstNSI RCATGY 1 cut(s) 327
BstPAI GACNNNNGTC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 677
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 599, 726, 769, 971
BstV2I GAAGAC 2 cut(s) 206, 608
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
Bsu36I CCTNAGG 1 cut(s) 777
BsuRI GGCC 4 cut(s) 266, 345, 638, 1089
BtgI CCRYGG 1 cut(s) 246
BtsI GCAGTG 3 cut(s) 805, 825, 1009
BtsIMutI CAGTG 5 cut(s) 428, 805, 818, 825, 1009
Cac8I GCNNGC 3 cut(s) 140, 640, 922
CaiI CAGNNNCTG 1 cut(s) 685
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 2 cut(s) 114, 1087
CseI GACGC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 556, 949, 1066
CviAII CATG 9 cut(s) 206, 247, 324, 364, 374, 468, 764, 857, 999
CviQI GTAC 3 cut(s) 556, 949, 1066
DdeI CTNAG 5 cut(s) 19, 420, 743, 777, 1047
DpnI GATC 4 cut(s) 93, 314, 412, 1082
DpnII GATC 4 cut(s) 91, 312, 410, 1080
DraI TTTAAA 1 cut(s) 529
DriI GACNNNNNGTC 1 cut(s) 462
EaeI YGGCCR 2 cut(s) 264, 636
Eam1104I CTCTTC 3 cut(s) 165, 678, 1101
Eam1105I GACNNNNNGTC 1 cut(s) 462
EarI CTCTTC 3 cut(s) 165, 678, 1101
Ecl136II GAGCTC 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 246, 627
Eco24I GRGCYC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 369
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 1087
EcoT14I CCWWGG 2 cut(s) 246, 627
EcoT22I ATGCAT 1 cut(s) 848
EcoT38I GRGCYC 1 cut(s) 371
ErhI CCWWGG 2 cut(s) 246, 627
FaeI CATG 9 cut(s) 209, 250, 327, 367, 377, 471, 767, 860, 1002
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FaqI GGGAC 1 cut(s) 81
FatI CATG 9 cut(s) 205, 246, 323, 363, 373, 467, 763, 856, 998
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 7 cut(s) 46, 78, 81, 588, 740, 783, 985
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 7 cut(s) 46, 78, 81, 588, 740, 783, 985
FspBI CTAG 2 cut(s) 477, 974
GlaI GCGC 1 cut(s) 143
GluI GCNGC 7 cut(s) 46, 78, 81, 588, 740, 783, 985
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 4 cut(s) 266, 345, 638, 1089
HapII CCGG 3 cut(s) 135, 936, 1100
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 144
Hin1II CATG 9 cut(s) 209, 250, 327, 367, 377, 471, 767, 860, 1002
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 5 cut(s) 227, 300, 443, 580, 689
HpaII CCGG 3 cut(s) 135, 936, 1100
HphI GGTGA 7 cut(s) 16, 208, 485, 660, 770, 970, 1046
Hpy166II GTNNAC 3 cut(s) 109, 382, 761
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 2 cut(s) 974, 1100
Hpy8I GTNNAC 3 cut(s) 109, 382, 761
HpyAV CCTTC 2 cut(s) 400, 955
HpyCH4III ACNGT 2 cut(s) 681, 1015
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 3 cut(s) 908, 917, 993
HpyF3I CTNAG 5 cut(s) 19, 420, 743, 777, 1047
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 9 cut(s) 209, 250, 327, 367, 377, 471, 767, 860, 1002
HspAI GCGC 1 cut(s) 142
Kpn2I TCCGGA 1 cut(s) 1099
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 4 cut(s) 91, 312, 410, 1080
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 5, 58, 155, 917
Lsp1109I GCAGC 4 cut(s) 599, 726, 769, 971
LweI GCATC 4 cut(s) 757, 833, 898, 1065
MaeI CTAG 2 cut(s) 477, 974
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 3 cut(s) 22, 359, 823
MalI GATC 4 cut(s) 93, 314, 412, 1082
MboI GATC 4 cut(s) 91, 312, 410, 1080
MboII GAAGA 6 cut(s) 182, 211, 415, 608, 665, 1088
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 371
MlsI TGGCCA 2 cut(s) 266, 638
MluCI AATT 2 cut(s) 165, 791
MluNI TGGCCA 2 cut(s) 266, 638
MlyI GAGTC 3 cut(s) 309, 452, 698
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 2 cut(s) 266, 638
Mph1103I ATGCAT 1 cut(s) 848
MroI TCCGGA 1 cut(s) 1099
MroXI GAANNNNTTC 1 cut(s) 579
MscI TGGCCA 2 cut(s) 266, 638
MseI TTAA 2 cut(s) 528, 567
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 2 cut(s) 266, 638
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 135, 936, 1100
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 986
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 908, 917, 993
NciI CCSGG 1 cut(s) 135
NcoI CCATGG 1 cut(s) 246
NdeII GATC 4 cut(s) 91, 312, 410, 1080
NlaIII CATG 9 cut(s) 209, 250, 327, 367, 377, 471, 767, 860, 1002
NlaIV GGNNCC 4 cut(s) 54, 151, 412, 1041
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 848
NspI RCATGY 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PctI GAATGC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 227, 580
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 7 cut(s) 47, 79, 82, 589, 741, 784, 986
PleI GAGTC 3 cut(s) 308, 451, 697
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 3 cut(s) 308, 451, 697
Ppu21I YACGTR 1 cut(s) 97
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 371
PspCI CACGTG 1 cut(s) 97
PspN4I GGNNCC 4 cut(s) 54, 151, 412, 1041
PspPI GGNCC 2 cut(s) 114, 1087
PspXI VCTCGAGB 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 3 cut(s) 557, 950, 1067
RsaNI GTAC 3 cut(s) 556, 949, 1066
RseI CAYNNNNRTG 1 cut(s) 575
SacI GAGCTC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 528, 567
SatI GCNGC 7 cut(s) 46, 78, 81, 588, 740, 783, 985
Sau3AI GATC 4 cut(s) 91, 312, 410, 1080
Sau96I GGNCC 2 cut(s) 114, 1087
SchI GAGTC 3 cut(s) 309, 452, 698
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 4 cut(s) 757, 833, 898, 1065
SfcI CTRYAG 1 cut(s) 677
Sfr274I CTCGAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 3 cut(s) 102, 176, 386
SmoI CTYRAG 3 cut(s) 102, 176, 386
Sse9I AATT 2 cut(s) 165, 791
SsiI CCGC 4 cut(s) 45, 78, 81, 144
SspMI CTAG 2 cut(s) 477, 974
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 2 cut(s) 246, 627
TaaI ACNGT 2 cut(s) 681, 1015
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 103, 123
TasI AATT 2 cut(s) 165, 791
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 3 cut(s) 48, 80, 83
TfiI GAWTC 2 cut(s) 227, 580
Tru1I TTAA 2 cut(s) 528, 567
Tru9I TTAA 2 cut(s) 528, 567
TscAI CASTG 5 cut(s) 428, 812, 818, 825, 1009
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 4 cut(s) 587, 739, 782, 984
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 240, 254, 416, 741
TspGWI ACGGA 1 cut(s) 966
TspRI CASTG 5 cut(s) 428, 812, 818, 825, 1009
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 1 cut(s) 791
XbaI TCTAGA 1 cut(s) 973
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 1050
XhoI CTCGAG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 2 cut(s) 477, 974
Zsp2I ATGCAT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.