AT1G19830

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016526
Physical Location & Seq
Forward (+)
6852116 .. 6852945
830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19830.1

Sequence Viewer

Length: 354 bp
ATGGCGATTATAAACCGGAGCAAGCTGACACAAACGACTATGATAAAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGATACACATGAACATGATGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGTCTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGAGTTTCAGCTTCTTCTACAACAAGCTGAGGAAGAGTTTGGCTTCGATCACAACATGGGTCTCACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAGCCAACATATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

117

Amino Acids

13.33

Weight (kDa)

6.4

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 110 3.8e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19830 AT1G75580
fragaria_vesca FvH4_2g38720
malus_domestica MD08G1014900.v1.1 MD15G1014200.v1.1
prunus_persica Prupe.1G367800_v2.0.a1
pyrus_communis pycom08g01330
rosa_chinensis RchiOBHm_Chr6g0302581
rosa_laevigata RLG00000011159
rosa_multiflora Rmu_sc0005455.1_g000012
rosa_roxburghii Rroxscaffold_7G00165540
rosa_rugosa Rorug06G0315100
rosa_samantha Rh6BG474000
rosa_wichuraiana Rw6G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccI GTMKAC 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 58, 69, 313
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 25, 232, 248, 308
AluI AGCT 4 cut(s) 25, 232, 248, 308
Alw26I GTCTC 2 cut(s) 117, 287
Ama87I CYCGRG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 117, 287
BmeT110I CYCGRG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 117, 287
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 287
BssMI GATC 1 cut(s) 268
Bst6I CTCTTC 3 cut(s) 53, 135, 249
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 117, 287
BstMBI GATC 1 cut(s) 268
BstSNI TACGTA 1 cut(s) 169
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 110, 116, 277
CviJI RGCY 6 cut(s) 25, 232, 248, 264, 308, 340
CviKI_1 RGCY 6 cut(s) 25, 232, 248, 264, 308, 340
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 3 cut(s) 53, 135, 249
EarI CTCTTC 3 cut(s) 53, 135, 249
Eco105I TACGTA 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 221
FaeI CATG 3 cut(s) 113, 119, 280
FaiI YATR 9 cut(s) 11, 41, 99, 111, 117, 278, 332, 346, 348
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 3 cut(s) 109, 115, 276
FblI GTMKAC 1 cut(s) 165
FokI GGATG 1 cut(s) 152
HapII CCGG 1 cut(s) 16
Hin1II CATG 3 cut(s) 113, 119, 280
HinfI GANTC 2 cut(s) 125, 178
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 55, 137
Hpy8I GTNNAC 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 168, 192
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 2 cut(s) 168, 192
Hsp92II CATG 3 cut(s) 113, 119, 280
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 29, 122, 172
MaeII ACGT 2 cut(s) 168, 192
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 4 cut(s) 70, 122, 227, 266
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 6 cut(s) 54, 144, 167, 244, 292, 337
MslI CAYNNNNRTG 2 cut(s) 114, 329
MspI CCGG 1 cut(s) 16
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 113, 119, 280
NmuCI GTSAC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 169
PsiI TTATAA 1 cut(s) 11
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 114, 329
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 114, 329
SnaBI TACGTA 1 cut(s) 169
TaiI ACGT 2 cut(s) 171, 195
TaqI TCGA 1 cut(s) 267
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 126
TspRI CASTG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.