pycom08g01330

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0016526
Physical Location & Seq
Forward (+)
990677 .. 990994
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01330.1

Sequence Viewer

Length: 318 bp
ATGGCCATCAGAAAATCAAACCGGCTTCCGCAAACGGCAGTCCTGAAGCAGATTCTCAAGAGGTGCTCCAGCTTGGGAAAAAAGCAGCAGCACTACGACGAACAGGGCCTCCCTCTCGATGTCCCAAAAGGTCATTTCGTCGTCTATGTCGGAGAAAACCGAAGCAGATACATCGTACCGATCTCCTTCCTCACCCGGCCCGAGTTCCAGAGCCTGCTTCACCAAGCAGAGGAAGAGTTCGGCTTCGATCACGACATGGGTCTCACGATTCCTTGCGAAGAAGTCGCTTTTCAGACATTAACCTCCATGCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

106

Amino Acids

12.09

Weight (kDa)

7.83

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 104 1e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19830 AT1G75580
fragaria_vesca FvH4_2g38720
malus_domestica MD08G1014900.v1.1 MD15G1014200.v1.1
prunus_persica Prupe.1G367800_v2.0.a1
pyrus_communis pycom08g01330
rosa_chinensis RchiOBHm_Chr6g0302581
rosa_laevigata RLG00000011159
rosa_multiflora Rmu_sc0005455.1_g000012
rosa_roxburghii Rroxscaffold_7G00165540
rosa_rugosa Rorug06G0315100
rosa_samantha Rh6BG474000
rosa_wichuraiana Rw6G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 229, 312
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 3 cut(s) 3, 106, 197
ApeKI GCWGC 2 cut(s) 85, 88
AspS9I GGNCC 2 cut(s) 106, 198
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 184, 212
AvaI CYCGRG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 97, 100
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 51
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 266
BisI GCNGC 2 cut(s) 86, 89
BlsI GCNGC 2 cut(s) 87, 90
Bme1390I CCNGG 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 106, 198
BmrFI CCNGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 312
Bse118I RCCGGY 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 229, 312
BseXI GCAGC 2 cut(s) 97, 100
BshFI GGCC 3 cut(s) 5, 108, 199
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 3 cut(s) 22, 196, 313
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 229, 312
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 3 cut(s) 5, 108, 199
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 180, 247
BspACI CCGC 1 cut(s) 29
BspANI GGCC 3 cut(s) 5, 108, 199
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 21
BssMI GATC 2 cut(s) 180, 247
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 183, 250
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 180, 247
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 97, 100
BsuRI GGCC 3 cut(s) 5, 108, 199
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 106, 198
Csp6I GTAC 1 cut(s) 176
CviAII CATG 2 cut(s) 256, 307
CviJI RGCY 7 cut(s) 5, 25, 72, 108, 199, 213, 243
CviKI_1 RGCY 7 cut(s) 5, 25, 72, 108, 199, 213, 243
CviQI GTAC 1 cut(s) 176
DpnI GATC 2 cut(s) 182, 249
DpnII GATC 2 cut(s) 180, 247
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 106
FaeI CATG 2 cut(s) 259, 310
FaiI YATR 3 cut(s) 147, 257, 308
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 255, 306
Fnu4HI GCNGC 2 cut(s) 86, 89
Fsp4HI GCNGC 2 cut(s) 86, 89
GluI GCNGC 2 cut(s) 86, 89
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 3 cut(s) 5, 108, 199
HapII CCGG 3 cut(s) 22, 196, 313
Hin1II CATG 2 cut(s) 259, 310
HinfI GANTC 2 cut(s) 52, 268
HpaII CCGG 3 cut(s) 22, 196, 313
HphI GGTGA 2 cut(s) 184, 212
Hpy188I TCNGA 3 cut(s) 11, 152, 294
Hpy188III TCNNGA 6 cut(s) 43, 58, 116, 208, 251, 265
Hpy99I CGWCG 2 cut(s) 101, 143
HpyAV CCTTC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 259, 310
Kzo9I GATC 2 cut(s) 180, 247
LmnI GCTCC 2 cut(s) 71, 315
LpnPI CCDG 7 cut(s) 35, 56, 82, 89, 209, 221, 227
Lsp1109I GCAGC 2 cut(s) 97, 100
MalI GATC 2 cut(s) 182, 249
MboI GATC 2 cut(s) 180, 247
MboII GAAGA 2 cut(s) 245, 290
MhlI GDGCHC 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 6 cut(s) 54, 119, 123, 200, 223, 313
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 22, 196, 313
MspR9I CCNGG 1 cut(s) 196
NciI CCSGG 1 cut(s) 196
NdeII GATC 2 cut(s) 180, 247
NlaIII CATG 2 cut(s) 259, 310
PfeI GAWTC 2 cut(s) 52, 268
PkrI GCNGC 2 cut(s) 87, 90
PshAI GACNNNNGTC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 106, 198
PstNI CAGNNNCTG 1 cut(s) 214
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 2 cut(s) 86, 89
Sau3AI GATC 2 cut(s) 180, 247
Sau96I GGNCC 2 cut(s) 106, 198
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 68
SetI ASST 4 cut(s) 65, 74, 133, 305
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 194
TaqI TCGA 2 cut(s) 117, 246
TfiI GAWTC 2 cut(s) 52, 268
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseI GCWGC 2 cut(s) 85, 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.