Rmu_sc0005455.1_g000012

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005455.1
OG0016526
Physical Location & Seq
Forward (+)
55182 .. 55499
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005455.1_g000012.1.cds

Sequence Viewer

Length: 318 bp
atggcgatcagaaaagccaaccggcttacgcaaactgcggtgctgaagcagattctgaagaggtgctccagcttggggaagaagcagcagtatgacgaacaggggcaccctttggacgtgccaaagggacattttgtggtttatgttggggaaaacagaagcaggtacatagtacccatctctttcctgacccgacctgagttccagagcctgcttcaccaagccgaggaggagttcgggttcgatcacgacatgggccttaccattccttgcgaggaagaagtttttcagtcgctaacgtccatgctcagcgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

105

Amino Acids

12.01

Weight (kDa)

6.41

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19830 AT1G75580
fragaria_vesca FvH4_2g38720
malus_domestica MD08G1014900.v1.1 MD15G1014200.v1.1
prunus_persica Prupe.1G367800_v2.0.a1
pyrus_communis pycom08g01330
rosa_chinensis RchiOBHm_Chr6g0302581
rosa_laevigata RLG00000011159
rosa_multiflora Rmu_sc0005455.1_g000012
rosa_roxburghii Rroxscaffold_7G00165540
rosa_rugosa Rorug06G0315100
rosa_samantha Rh6BG474000
rosa_wichuraiana Rw6G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 105
AciI CCGC 1 cut(s) 38
AcuI CTGAAG 2 cut(s) 65, 77
AfaI GTAC 2 cut(s) 167, 174
AfeI AGCGCT 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 75, 226
AjiI CACGTC 1 cut(s) 118
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 68
AlwNI CAGNNNCTG 2 cut(s) 55, 211
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 1 cut(s) 86
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 52
Bpu1102I GCTNAGC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 226
Bse118I RCCGGY 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 75, 226
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 2 cut(s) 242, 245
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 75, 226
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 68, 108
Bsp143I GATC 2 cut(s) 6, 244
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 6, 244
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 198, 308, 315
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 9, 247
BstMBI GATC 2 cut(s) 6, 244
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 258
BtrI CACGTC 1 cut(s) 118
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 212
CaiI CAGNNNCTG 2 cut(s) 55, 211
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 166, 173
CviAII CATG 2 cut(s) 253, 304
CviJI RGCY 6 cut(s) 17, 25, 72, 210, 224, 258
CviKI_1 RGCY 6 cut(s) 17, 25, 72, 210, 224, 258
CviQI GTAC 2 cut(s) 166, 173
DdeI CTNAG 3 cut(s) 198, 308, 315
DpnI GATC 2 cut(s) 8, 246
DpnII GATC 2 cut(s) 6, 244
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco47III AGCGCT 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 65, 77
FaeI CATG 2 cut(s) 256, 307
FaiI YATR 5 cut(s) 93, 144, 170, 254, 305
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 252, 303
Fnu4HI GCNGC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 86
GlaI GCGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 256, 307
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 11, 57
Hpy188III TCNNGA 3 cut(s) 187, 205, 248
HpyCH4IV ACGT 2 cut(s) 117, 299
HpyF3I CTNAG 3 cut(s) 198, 308, 315
HpySE526I ACGT 2 cut(s) 117, 299
Hsp92II CATG 2 cut(s) 256, 307
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 6, 244
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 8 cut(s) 35, 82, 86, 148, 200, 210, 218, 224
Lsp1109I GCAGC 1 cut(s) 97
MaeII ACGT 2 cut(s) 117, 299
MalI GATC 2 cut(s) 8, 246
MboI GATC 2 cut(s) 6, 244
MboII GAAGA 3 cut(s) 70, 91, 290
MhlI GDGCHC 2 cut(s) 68, 108
MnlI CCTC 4 cut(s) 54, 220, 223, 268
MroXI GAANNNNTTC 1 cut(s) 285
MspI CCGG 1 cut(s) 22
NdeII GATC 2 cut(s) 6, 244
NlaIII CATG 2 cut(s) 256, 307
NlaIV GGNNCC 1 cut(s) 107
NmeAIII GCCGAG 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 2 cut(s) 55, 211
RsaI GTAC 2 cut(s) 167, 174
RsaNI GTAC 2 cut(s) 166, 173
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 6, 244
Sau96I GGNCC 1 cut(s) 256
SduI GDGCHC 2 cut(s) 68, 108
SetI ASST 6 cut(s) 65, 74, 120, 167, 199, 302
SsiI CCGC 1 cut(s) 38
TaiI ACGT 2 cut(s) 120, 302
TaqI TCGA 1 cut(s) 243
TfiI GAWTC 1 cut(s) 52
TseI GCWGC 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.