FvH4_2g38720

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016526
Physical Location & Seq
Forward (+)
27943488 .. 27944274
787 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38720.t1

Sequence Viewer

Length: 321 bp
ATGGCGATCAGAAAACCCAACAGGCTTACTCAAGCGGCGATGCTGAAGCAGATTCTGAAGAGGTGCTCCAGCTTGGGGAAGAAGCAGCAACACTATGATGAACAGGGCTTACCTTTGGACGTGCCAAAGGGACACTTTGTGGTTTATGTTGGGGAAAACAGAAGCAGGTACATAGTACCCATCTCTTTCCTGACCCGACCCGAGTTCCAGAGCCTGCTTCACCAAGCTGAGGAGGAGTTCGGGTTCGATCACGACATGGGTCTCACCATTCCTTGTGAAGAAGAAGCTTTCCAGTCACTAACATCCATGCTGAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

107

Amino Acids

12.14

Weight (kDa)

6.41

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 104 1.5e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19830 AT1G75580
fragaria_vesca FvH4_2g38720
malus_domestica MD08G1014900.v1.1 MD15G1014200.v1.1
prunus_persica Prupe.1G367800_v2.0.a1
pyrus_communis pycom08g01330
rosa_chinensis RchiOBHm_Chr6g0302581
rosa_laevigata RLG00000011159
rosa_multiflora Rmu_sc0005455.1_g000012
rosa_roxburghii Rroxscaffold_7G00165540
rosa_rugosa Rorug06G0315100
rosa_samantha Rh6BG474000
rosa_wichuraiana Rw6G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
AciI CCGC 1 cut(s) 35
AcuI CTGAAG 2 cut(s) 65, 77
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 2 cut(s) 170, 177
AfiI CCNNNNNNNGG 2 cut(s) 75, 229
AjiI CACGTC 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 4 cut(s) 72, 227, 287, 315
AluI AGCT 4 cut(s) 72, 227, 287, 315
Alw21I GWGCWC 2 cut(s) 68, 317
Alw26I GTCTC 1 cut(s) 266
AlwNI CAGNNNCTG 2 cut(s) 55, 214
Ama87I CYCGRG 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 212, 256
AvaI CYCGRG 1 cut(s) 200
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 68, 317
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 36, 86
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 2 cut(s) 37, 87
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 121
BmsI GCATC 1 cut(s) 30
BoxI GACNNNNGTC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 229
Bse1I ACTGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 75, 229
BseMII CTCAG 2 cut(s) 219, 302
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 245, 248
BseXI GCAGC 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 68, 317
BsiHKCI CYCGRG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 75, 229
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 68, 317
Bsp143I GATC 2 cut(s) 6, 247
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 220, 303
BspMI ACCTGC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 292
BssMI GATC 2 cut(s) 6, 247
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 228, 311, 318
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 2 cut(s) 9, 250
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 6, 247
BstPAI GACNNNNGTC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 302
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 2 cut(s) 55, 214
Csp6I GTAC 2 cut(s) 169, 176
CviAII CATG 2 cut(s) 256, 307
CviJI RGCY 7 cut(s) 25, 72, 108, 213, 227, 287, 315
CviKI_1 RGCY 7 cut(s) 25, 72, 108, 213, 227, 287, 315
CviQI GTAC 2 cut(s) 169, 176
DdeI CTNAG 3 cut(s) 228, 311, 318
DpnI GATC 2 cut(s) 8, 249
DpnII GATC 2 cut(s) 6, 247
DraIII CACNNNGTG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 65, 77
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 259, 310
FaiI YATR 5 cut(s) 96, 147, 173, 257, 308
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 144
FatI CATG 2 cut(s) 255, 306
Fnu4HI GCNGC 2 cut(s) 36, 86
FokI GGATG 1 cut(s) 289
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 36, 86
GluI GCNGC 2 cut(s) 36, 86
GsuI CTGGAG 1 cut(s) 52
Hin1II CATG 2 cut(s) 259, 310
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 1 cut(s) 52
HphI GGTGA 2 cut(s) 212, 256
Hpy188I TCNGA 2 cut(s) 11, 57
Hpy188III TCNNGA 3 cut(s) 190, 208, 251
HpyCH4IV ACGT 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 228, 311, 318
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 259, 310
Kzo9I GATC 2 cut(s) 6, 247
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 8 cut(s) 7, 82, 89, 151, 203, 221, 227, 305
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 294
MalI GATC 2 cut(s) 8, 249
MboI GATC 2 cut(s) 6, 247
MboII GAAGA 4 cut(s) 70, 91, 290, 293
MhlI GDGCHC 2 cut(s) 68, 317
MnlI CCTC 3 cut(s) 54, 223, 226
MslI CAYNNNNRTG 1 cut(s) 96
NdeII GATC 2 cut(s) 6, 247
NlaIII CATG 2 cut(s) 259, 310
NmuCI GTSAC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 37, 87
PshAI GACNNNNGTC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 317
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstNI CAGNNNCTG 2 cut(s) 55, 214
RsaI GTAC 2 cut(s) 170, 177
RsaNI GTAC 2 cut(s) 169, 176
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 317
SatI GCNGC 2 cut(s) 36, 86
Sau3AI GATC 2 cut(s) 6, 247
SduI GDGCHC 2 cut(s) 68, 317
SetI ASST 8 cut(s) 65, 74, 115, 123, 170, 229, 289, 317
SfaNI GCATC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SsiI CCGC 1 cut(s) 35
SstI GAGCTC 1 cut(s) 317
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 246
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 52
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.