AT1G75580

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016526
Physical Location & Seq
Forward (+)
28377377 .. 28378310
934 bp
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UTR
Exon/CDS
Intron
AT1G75580.1

Sequence Viewer

Length: 327 bp
ATGGCGATGAAAAAAGCAAACAAGCTAACGCAAACGGCGATGATCAAGCAAATCTTGAAGAGGTGCTCGAGCTTGGGAAAGAAACAGAGTAATGTGTACGGTGAAGACGAAAACGGATCTCCTCTTAACGTACCAAAAGGTCACTTCGTCGTCTACGTCGGAGAGAATCGGGTTAGGTACGTTGTGCCCATTTCGTTTTTGACCCGACCTGAGTTTCAGCTTCTTCTCCAACAAGCCGAGGAAGAGTTTGGCTTTGATCATGACATGGGTCTCACTATCCCTTGTGAAGAAGTCGTTTTCCGATCTCTCACCTCCATGCTCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

108

Amino Acids

12.31

Weight (kDa)

8.62

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 107 5.3e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19830 AT1G75580
fragaria_vesca FvH4_2g38720
malus_domestica MD08G1014900.v1.1 MD15G1014200.v1.1
prunus_persica Prupe.1G367800_v2.0.a1
pyrus_communis pycom08g01330
rosa_chinensis RchiOBHm_Chr6g0302581
rosa_laevigata RLG00000011159
rosa_multiflora Rmu_sc0005455.1_g000012
rosa_roxburghii Rroxscaffold_7G00165540
rosa_rugosa Rorug06G0315100
rosa_samantha Rh6BG474000
rosa_wichuraiana Rw6G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AclWI GGATC 1 cut(s) 124
AfaI GTAC 3 cut(s) 98, 132, 179
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 3 cut(s) 25, 72, 220
AluI AGCT 3 cut(s) 25, 72, 220
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 113, 301
AvaI CYCGRG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 51
BclI TGATCA 2 cut(s) 42, 256
BcoDI GTCTC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 67
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 68, 189
Bsp143I GATC 4 cut(s) 42, 116, 256, 302
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 4 cut(s) 42, 116, 256, 302
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 53, 237
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 4 cut(s) 45, 119, 259, 305
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 4 cut(s) 42, 116, 256, 302
BstPAI GACNNNNGTC 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtgZI GCGATG 2 cut(s) 20, 53
CciI TCATGA 1 cut(s) 259
Csp6I GTAC 3 cut(s) 97, 131, 178
CviAII CATG 3 cut(s) 260, 265, 316
CviJI RGCY 5 cut(s) 25, 72, 220, 236, 252
CviKI_1 RGCY 5 cut(s) 25, 72, 220, 236, 252
CviQI GTAC 3 cut(s) 97, 131, 178
DdeI CTNAG 1 cut(s) 210
DpnI GATC 4 cut(s) 44, 118, 258, 304
DpnII GATC 4 cut(s) 42, 116, 256, 302
Eam1104I CTCTTC 2 cut(s) 53, 237
EarI CTCTTC 2 cut(s) 53, 237
Eco31I GGTCTC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 67
FaeI CATG 3 cut(s) 263, 268, 319
FaiI YATR 3 cut(s) 261, 266, 317
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 3 cut(s) 259, 264, 315
FbaI TGATCA 2 cut(s) 42, 256
FblI GTMKAC 1 cut(s) 153
Hin1II CATG 3 cut(s) 263, 268, 319
HinfI GANTC 1 cut(s) 166
HphI GGTGA 2 cut(s) 113, 301
Hpy166II GTNNAC 2 cut(s) 97, 154
Hpy188I TCNGA 3 cut(s) 161, 302, 323
Hpy188III TCNNGA 2 cut(s) 55, 260
Hpy8I GTNNAC 2 cut(s) 97, 154
Hpy99I CGWCG 2 cut(s) 152, 161
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 3 cut(s) 129, 156, 180
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 3 cut(s) 129, 156, 180
Hsp92II CATG 3 cut(s) 263, 268, 319
Ksp22I TGATCA 2 cut(s) 42, 256
Kzo9I GATC 4 cut(s) 42, 116, 256, 302
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 1 cut(s) 222
MaeII ACGT 3 cut(s) 129, 156, 180
MaeIII GTNAC 1 cut(s) 140
MalI GATC 4 cut(s) 44, 118, 258, 304
MboI GATC 4 cut(s) 42, 116, 256, 302
MboII GAAGA 5 cut(s) 70, 116, 215, 254, 299
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 68, 189
MmeI TCCRAC 2 cut(s) 139, 253
MnlI CCTC 4 cut(s) 54, 132, 232, 322
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 314
NdeII GATC 4 cut(s) 42, 116, 256, 302
NlaIII CATG 3 cut(s) 263, 268, 319
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 105, 153
PfeI GAWTC 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 267
PspXI VCTCGAGB 1 cut(s) 67
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 3 cut(s) 98, 132, 179
RsaNI GTAC 3 cut(s) 97, 131, 178
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 4 cut(s) 42, 116, 256, 302
SduI GDGCHC 2 cut(s) 68, 189
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 3 cut(s) 132, 159, 183
TaqI TCGA 1 cut(s) 68
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.