MD15G1014200.v1.1

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016526
Physical Location & Seq
Forward (+)
805247 .. 805606
360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1014200.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGCCATCAGAAAATCAAACCGGCTTCCGCAAACAGCCGTTCTGAAGCAGATTCTCAAGAGGTGCTCCAGCTTGGGAAAAAAGCAGCAACACTACGACGAACAGGGCCTCCCTCTCGATGTCCCAAAAGGTCATTTCGTCGTCTATGTCGGAGAAAACAGAAGCAGATACATCGTACCGATCTCCTTCCTGACCCGGCCCGAGTTCCAGAGCCTGCTCCATCAAGCAGAGGAAGAATTCGGCTTCGATCACGACATGGGTCTCACGATTCCTTGCGAAGAAGTCGTTTTTCAGACATTAACTTCCATGCTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

7.83

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 104 3.1e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19830 AT1G75580
fragaria_vesca FvH4_2g38720
malus_domestica MD08G1014900.v1.1 MD15G1014200.v1.1
prunus_persica Prupe.1G367800_v2.0.a1
pyrus_communis pycom08g01330
rosa_chinensis RchiOBHm_Chr6g0302581
rosa_laevigata RLG00000011159
rosa_multiflora Rmu_sc0005455.1_g000012
rosa_roxburghii Rroxscaffold_7G00165540
rosa_rugosa Rorug06G0315100
rosa_samantha Rh6BG474000
rosa_wichuraiana Rw6G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 313
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 312
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 3 cut(s) 3, 106, 197
ApeKI GCWGC 2 cut(s) 85, 310
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 106, 198
AsuC2I CCSGG 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 97, 297
BccI CCATC 2 cut(s) 14, 228
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 266
BisI GCNGC 2 cut(s) 86, 311
BlsI GCNGC 2 cut(s) 87, 312
Bme1390I CCNGG 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 106, 198
BmrFI CCNGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 97, 297
BshFI GGCC 3 cut(s) 5, 108, 199
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 22, 196
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 3 cut(s) 5, 108, 199
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 180, 247
BspACI CCGC 2 cut(s) 29, 313
BspANI GGCC 3 cut(s) 5, 108, 199
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 21
BssMI GATC 2 cut(s) 180, 247
BstC8I GCNNGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 183, 250
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 180, 247
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 97, 297
BsuRI GGCC 3 cut(s) 5, 108, 199
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 106, 198
Csp6I GTAC 1 cut(s) 176
CviAII CATG 2 cut(s) 256, 307
CviJI RGCY 8 cut(s) 5, 25, 38, 72, 108, 199, 213, 243
CviKI_1 RGCY 8 cut(s) 5, 25, 38, 72, 108, 199, 213, 243
CviQI GTAC 1 cut(s) 176
DpnI GATC 2 cut(s) 182, 249
DpnII GATC 2 cut(s) 180, 247
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 236
FaeI CATG 2 cut(s) 259, 310
FaiI YATR 3 cut(s) 147, 257, 308
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 255, 306
Fnu4HI GCNGC 2 cut(s) 86, 311
Fsp4HI GCNGC 2 cut(s) 86, 311
GluI GCNGC 2 cut(s) 86, 311
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 3 cut(s) 5, 108, 199
HapII CCGG 2 cut(s) 22, 196
Hin1II CATG 2 cut(s) 259, 310
HinfI GANTC 2 cut(s) 52, 268
HpaII CCGG 2 cut(s) 22, 196
Hpy188I TCNGA 4 cut(s) 11, 45, 152, 294
Hpy188III TCNNGA 6 cut(s) 58, 116, 190, 208, 251, 265
Hpy99I CGWCG 2 cut(s) 101, 143
HpyAV CCTTC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 259, 310
Kzo9I GATC 2 cut(s) 180, 247
LmnI GCTCC 2 cut(s) 71, 222
LpnPI CCDG 7 cut(s) 35, 82, 89, 203, 209, 221, 227
Lsp1109I GCAGC 2 cut(s) 97, 297
MalI GATC 2 cut(s) 182, 249
MboI GATC 2 cut(s) 180, 247
MboII GAAGA 2 cut(s) 245, 290
MhlI GDGCHC 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 236
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 4 cut(s) 54, 119, 123, 223
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 22, 196
MspR9I CCNGG 1 cut(s) 196
NciI CCSGG 1 cut(s) 196
NdeII GATC 2 cut(s) 180, 247
NlaIII CATG 2 cut(s) 259, 310
PfeI GAWTC 2 cut(s) 52, 268
PkrI GCNGC 2 cut(s) 87, 312
PshAI GACNNNNGTC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 106, 198
PstNI CAGNNNCTG 1 cut(s) 214
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 2 cut(s) 86, 311
Sau3AI GATC 2 cut(s) 180, 247
Sau96I GGNCC 2 cut(s) 106, 198
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 68
SetI ASST 3 cut(s) 65, 74, 133
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 29, 313
StyD4I CCNGG 1 cut(s) 194
TaqI TCGA 2 cut(s) 117, 246
TasI AATT 1 cut(s) 236
TfiI GAWTC 2 cut(s) 52, 268
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseI GCWGC 2 cut(s) 85, 310
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.