Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014910

Physical Location & Seq

Genomic Coordinates Forward (+)

6913001 .. 6914634

Gene Structure 1634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTTCAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGTTATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATCAACCCTAAGGCCAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGAGCGAATGCACAACAACCTAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCTGAAGCACTTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGTCAGTCTAGAGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

165

Amino Acids

16.64

Weight (kDa)

8.62

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	17 - 76	1.9e-15	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910 AT2G16510 AT4G34720 AT4G34720 AT4G38920 AT4G38920
malus_domestica	MD05G1055000.v1.1 MD10G1062400.v1.1
pyrus_communis	pycom05g04550
rosa_chinensis	RchiOBHm_Chr6g0268231
rosa_laevigata	RLG00000013924
rosa_multiflora	Rmu_sc0007606.1_g000004 Rmu_sc0010202.1_g000001
rosa_roxburghii	Rroxscaffold_7G00199940
rosa_rugosa	Rorug06G0039800.1
rosa_wichuraiana	Rw6G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	65, 111
AciI	CCGC	5 cut(s)	18, 60, 63, 111, 324
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	3 cut(s)	95, 232, 440
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	2 cut(s)	151, 476
AluI	AGCT	2 cut(s)	151, 476
Alw26I	GTCTC	4 cut(s)	136, 314, 323, 449
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	56, 89
AspLEI	GCGC	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	471
AxyI	CCTNAGG	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	43, 101
BccI	CCATC	2 cut(s)	124, 266
BcgI	CGANNNNNNTGC	4 cut(s)	11, 45, 260, 294
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	4 cut(s)	136, 314, 323, 449
BfaI	CTAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
BlsI	GCNGC	5 cut(s)	20, 58, 61, 64, 91
BmeT110I	CYCGRG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	413
BsaI	GGTCTC	4 cut(s)	136, 314, 323, 449
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	2 cut(s)	233, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	2 cut(s)	326, 356
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	459
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	43, 101
BshFI	GGCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	4 cut(s)	234, 294, 327, 357
BsiWI	CGTACG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	4 cut(s)	136, 314, 323, 449
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	4 cut(s)	136, 314, 323, 449
BsoBI	CYCGRG	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	5 cut(s)	18, 60, 63, 111, 324
BspANI	GGCC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	4 cut(s)	136, 314, 323, 449
BsrBI	CCGCTC	2 cut(s)	65, 111
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	326, 356
BssAI	RCCGGY	2 cut(s)	326, 356
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	3 cut(s)	101, 295, 472
BstDEI	CTNAG	2 cut(s)	246, 384
BstF5I	GGATG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	4 cut(s)	136, 314, 323, 449
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 332
BstV1I	GCAGC	2 cut(s)	43, 101
Bsu15I	ATCGAT	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	164
BtgZI	GCGATG	2 cut(s)	36, 366
BtsCI	GGATG	1 cut(s)	459
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	326, 356
ClaI	ATCGAT	1 cut(s)	164
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	94, 231, 439
CviJI	RGCY	8 cut(s)	5, 151, 185, 251, 276, 335, 476, 491
CviKI_1	RGCY	8 cut(s)	5, 151, 185, 251, 276, 335, 476, 491
CviQI	GTAC	3 cut(s)	94, 231, 439
DdeI	CTNAG	2 cut(s)	246, 384
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	101, 295, 472
EarI	CTCTTC	3 cut(s)	101, 295, 472
EciI	GGCGGA	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	49
Eco31I	GGTCTC	4 cut(s)	136, 314, 323, 449
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaiI	YATR	5 cut(s)	83, 182, 204, 279, 332
FaqI	GGGAC	1 cut(s)	112
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	4 cut(s)	234, 294, 327, 357
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	45, 237, 403, 409
HpaII	CCGG	4 cut(s)	234, 294, 327, 357
Hpy188I	TCNGA	2 cut(s)	44, 408
Hpy188III	TCNNGA	2 cut(s)	471, 486
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 332
HpyF3I	CTNAG	2 cut(s)	246, 384
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	210
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	37, 86
Lsp1109I	GCAGC	2 cut(s)	43, 101
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	486
MalI	GATC	1 cut(s)	212
MbiI	CCGCTC	2 cut(s)	65, 111
MboI	GATC	1 cut(s)	210
MboII	GAAGA	4 cut(s)	31, 118, 282, 459
MluCI	AATT	1 cut(s)	342
MnlI	CCTC	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	234, 294, 327, 357
Mva1269I	GAATGC	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	62, 332
NdeII	GATC	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	4 cut(s)	45, 237, 403, 409
Pfl23II	CGTACG	1 cut(s)	93
PkrI	GCNGC	5 cut(s)	20, 58, 61, 64, 91
PspLI	CGTACG	1 cut(s)	93
RsaI	GTAC	3 cut(s)	95, 232, 440
RsaNI	GTAC	3 cut(s)	94, 231, 439
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	5 cut(s)	19, 57, 60, 63, 90
Sau3AI	GATC	1 cut(s)	210
SetI	ASST	4 cut(s)	153, 199, 385, 478
SfaNI	GCATC	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	5 cut(s)	18, 60, 63, 111, 324
SspMI	CTAG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	128, 164, 270, 472
TasI	AATT	1 cut(s)	342
TauI	GCSGC	3 cut(s)	21, 62, 65
TfiI	GAWTC	4 cut(s)	45, 237, 403, 409
TseI	GCWGC	2 cut(s)	56, 89
TspDTI	ATGAA	2 cut(s)	39, 173
XbaI	TCTAGA	1 cut(s)	485
XhoI	CTCGAG	1 cut(s)	471
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.