Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014910

Physical Location & Seq

Genomic Coordinates Reverse (-)

7158991 .. 7160934

Gene Structure 1944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCTACGTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTTGGCGCCGCCGCCGCTCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGTTATGGCTGGTGTTTTGGGTATTTATGGACTTATTATTGCTGTTATCATTAGTACCGGCATCAATCCTAAGGCTAAGTCTTACTACCTATTTGACGGATACGCTCACCTTTCGTCTGGTCTTGCTTGTGGTCTTGCTGGACTCTCAGCTGGTATGGCTATTGGAATTGTTGGTGATGCGGGTGTTAGGGCAAATGCTCAGCAGCCTAAGCTATTTGTTGGGATGATTCTTATCCTTATCTTTGCGGAAGCGCTCGCTCTATACGGCCTAATTGTAGGCATCATTTTATCTTCTCGAGCTGGTCAGTCCAGAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

164

Amino Acids

16.57

Weight (kDa)

8.62

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	16 - 75	3.8e-15	ATP synthase subunit C
ATP-synt_C	PF00137	96 - 154	3e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910 AT2G16510 AT4G34720 AT4G34720 AT4G38920 AT4G38920
malus_domestica	MD05G1055000.v1.1 MD10G1062400.v1.1
pyrus_communis	pycom05g04550
rosa_chinensis	RchiOBHm_Chr6g0268231
rosa_laevigata	RLG00000013924
rosa_multiflora	Rmu_sc0007606.1_g000004 Rmu_sc0010202.1_g000001
rosa_roxburghii	Rroxscaffold_7G00199940
rosa_rugosa	Rorug06G0039800.1
rosa_wichuraiana	Rw6G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	6 cut(s)	15, 54, 57, 60, 353, 419
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	229
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	126
AluBI	AGCT	4 cut(s)	86, 323, 385, 473
AluI	AGCT	4 cut(s)	86, 323, 385, 473
Alw26I	GTCTC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	468
Aor51HI	AGCGCT	1 cut(s)	426
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	2 cut(s)	86, 376
AspLEI	GCGC	2 cut(s)	53, 427
AsuHPI	GGTGA	2 cut(s)	272, 359
AvaI	CYCGRG	1 cut(s)	468
AxyI	CCTNAGG	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	73, 388
BceAI	ACGGC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciVI	GTATCC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	133
BfoI	RGCGCY	2 cut(s)	54, 428
BfuI	GTATCC	1 cut(s)	266
BisI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	6 cut(s)	17, 55, 58, 61, 88, 378
BmeT110I	CYCGRG	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	3 cut(s)	243, 340, 462
BpiI	GAAGAC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	230
Bse21I	CCTNAGG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	3 cut(s)	135, 333, 386
BseXI	GCAGC	2 cut(s)	73, 388
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	468
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	6 cut(s)	15, 54, 57, 60, 353, 419
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	136, 332, 385
BspLI	GGNNCC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	6 cut(s)	144, 243, 249, 319, 372, 381
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	2 cut(s)	54, 428
BstHHI	GCGC	2 cut(s)	53, 427
BstMAI	GTCTC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 59, 329, 382
BstV1I	GCAGC	2 cut(s)	73, 388
BstV2I	GAAGAC	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	429
CfoI	GCGC	2 cut(s)	53, 427
Cfr10I	RCCGGY	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	228
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	6 cut(s)	144, 243, 249, 319, 372, 381
DinI	GGCGCC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	426
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	46
FaiI	YATR	7 cut(s)	80, 93, 155, 179, 201, 329, 436
FaqI	GGGAC	1 cut(s)	152
FauI	CCCGC	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
GlaI	GCGC	2 cut(s)	52, 426
GluI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
HaeII	RGCGCY	2 cut(s)	54, 428
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	2 cut(s)	53, 427
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	51, 425
HinP1I	GCGC	2 cut(s)	51, 425
HinfI	GANTC	2 cut(s)	315, 400
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	272, 359
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	468, 483
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 59, 329, 382
HpyF3I	CTNAG	6 cut(s)	144, 243, 249, 319, 372, 381
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	2 cut(s)	51, 425
KasI	GGCGCC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	34, 83
LpnPI	CCDG	9 cut(s)	88, 156, 168, 183, 244, 276, 297, 309, 459
Lsp1109I	GCAGC	2 cut(s)	73, 388
LweI	GCATC	3 cut(s)	243, 340, 462
MaeII	ACGT	1 cut(s)	8
MbiI	CCGCTC	1 cut(s)	62
MboII	GAAGA	3 cut(s)	28, 61, 456
MluCI	AATT	2 cut(s)	339, 444
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	15, 323
MspI	CCGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	48, 59, 329, 382
NarI	GGCGCC	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	6 cut(s)	17, 55, 58, 61, 88, 378
PleI	GAGTC	1 cut(s)	309
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SatI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
SchI	GAGTC	1 cut(s)	309
SetI	ASST	8 cut(s)	11, 88, 145, 264, 285, 325, 387, 475
SfaNI	GCATC	3 cut(s)	243, 340, 462
SfoI	GGCGCC	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	468
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	2 cut(s)	339, 444
SsiI	CCGC	6 cut(s)	15, 54, 57, 60, 353, 419
SspDI	GGCGCC	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	46
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	469
TasI	AATT	2 cut(s)	339, 444
TauI	GCSGC	4 cut(s)	18, 56, 59, 62
TfiI	GAWTC	1 cut(s)	400
TseI	GCWGC	2 cut(s)	86, 376
TspDTI	ATGAA	2 cut(s)	36, 170
TspGWI	ACGGA	2 cut(s)	21, 285
XhoI	CTCGAG	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.