Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014910

Physical Location & Seq

Genomic Coordinates Forward (+)

5341512 .. 5343764

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTTCAACATTCAGTGGCGATGAAACGGCGCCGTTCTTCGGCTTCCTCGGCGCTGCTGCTGCCCTCGTTTTCTCATGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTTGGTGTGGCATCCATGGGGGTGATGAGGCCTGAGCTGGTGATGAAATCCATTGTTCCGGTCGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATCATCAGTACTGGGATTAACCCAAAGGCCAAGTCATACTACCTCTTTGATGGTTATGCACATCTCTCTTCTGGTCTTGCTTGCGGTCTCGCTGGACTCTCTGCTGGAATGGCAATTGGTATTGTTGGCGACGCTGGTGTAAGAGCTAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATCCTCATTCTCATCTTTGCTGAAGCACTGGCCCTCTACGGCCTCATTGTTGGCATCATCTTGTCTTCTCGATCAGGGCAATCCAGAGCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

166

Amino Acids

16.66

Weight (kDa)

8.62

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	17 - 76	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	97 - 155	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910 AT2G16510 AT4G34720 AT4G34720 AT4G38920 AT4G38920
malus_domestica	MD05G1055000.v1.1 MD10G1062400.v1.1
pyrus_communis	pycom05g04550
rosa_chinensis	RchiOBHm_Chr6g0268231
rosa_laevigata	RLG00000013924
rosa_multiflora	Rmu_sc0007606.1_g000004 Rmu_sc0010202.1_g000001
rosa_roxburghii	Rroxscaffold_7G00199940
rosa_rugosa	Rorug06G0039800.1
rosa_wichuraiana	Rw6G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	491
AciI	CCGC	2 cut(s)	306, 491
AclWI	GGATC	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	3 cut(s)	89, 151, 368
AluI	AGCT	3 cut(s)	89, 151, 368
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	397
AoxI	GGCC	5 cut(s)	143, 205, 249, 432, 442
ApeKI	GCWGC	5 cut(s)	56, 59, 62, 89, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	2 cut(s)	34, 56
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	2 cut(s)	148, 166
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	5 cut(s)	43, 46, 49, 76, 391
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	3 cut(s)	19, 45, 457
BcoDI	GTCTC	1 cut(s)	314
BfoI	RGCGCY	2 cut(s)	35, 57
BisI	GCNGC	5 cut(s)	57, 60, 63, 90, 380
BlsI	GCNGC	5 cut(s)	58, 61, 64, 91, 381
BmcAI	AGTACT	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	134, 465
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	49, 129
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	238, 435
BseDI	CCNNGG	2 cut(s)	49, 129
BseGI	GGATG	2 cut(s)	125, 405
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	238, 435
BseXI	GCAGC	5 cut(s)	43, 46, 49, 76, 391
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	145, 207, 251, 434, 444
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	5 cut(s)	145, 207, 251, 434, 444
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	402, 473
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	2 cut(s)	306, 491
BspANI	GGCC	5 cut(s)	145, 207, 251, 434, 444
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	238, 435
BssECI	CCNNGG	2 cut(s)	49, 129
BssMI	GATC	2 cut(s)	402, 473
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	125, 405
BstH2I	RGCGCY	2 cut(s)	35, 57
BstHHI	GCGC	2 cut(s)	34, 56
BstKTI	GATC	2 cut(s)	405, 476
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	402, 473
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 62, 332
BstV1I	GCAGC	5 cut(s)	43, 46, 49, 76, 391
BstV2I	GAAGAC	1 cut(s)	459
BsuRI	GGCC	5 cut(s)	145, 207, 251, 434, 444
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	125, 405
BtsIMutI	CAGTG	2 cut(s)	22, 428
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	2 cut(s)	34, 56
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	78, 130
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	2 cut(s)	404, 475
DpnII	GATC	2 cut(s)	402, 473
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	81, 133
FaiI	YATR	8 cut(s)	79, 83, 96, 131, 182, 204, 259, 279
FatI	CATG	2 cut(s)	77, 129
Fnu4HI	GCNGC	5 cut(s)	57, 60, 63, 90, 380
FokI	GGATG	2 cut(s)	112, 412
Fsp4HI	GCNGC	5 cut(s)	57, 60, 63, 90, 380
GlaI	GCGC	2 cut(s)	33, 55
GluI	GCNGC	5 cut(s)	57, 60, 63, 90, 380
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	2 cut(s)	35, 57
HaeIII	GGCC	5 cut(s)	145, 207, 251, 434, 444
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	2 cut(s)	34, 56
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	81, 133
Hin6I	GCGC	2 cut(s)	32, 54
HinP1I	GCGC	2 cut(s)	32, 54
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	148, 166
Hpy188III	TCNNGA	2 cut(s)	471, 486
Hpy99I	CGWCG	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	281, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 62, 332
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	81, 133
HspAI	GCGC	2 cut(s)	32, 54
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	402, 473
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	5 cut(s)	43, 46, 49, 76, 391
LweI	GCATC	2 cut(s)	134, 465
MalI	GATC	2 cut(s)	404, 475
MbiI	CCGCTC	1 cut(s)	491
MboI	GATC	2 cut(s)	402, 473
MboII	GAAGA	3 cut(s)	31, 282, 459
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	1 cut(s)	336
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	59, 77, 135, 275, 416, 446, 455
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	51, 62, 332
NarI	GGCGCC	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	402, 473
NlaIII	CATG	2 cut(s)	81, 133
NlaIV	GGNNCC	1 cut(s)	33
NmeAIII	GCCGAG	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	58, 61, 64, 91, 381
PleI	GAGTC	1 cut(s)	312
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	433
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	5 cut(s)	57, 60, 63, 90, 380
Sau3AI	GATC	2 cut(s)	402, 473
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	312
SetI	ASST	4 cut(s)	91, 153, 267, 370
SfaNI	GCATC	2 cut(s)	134, 465
SfoI	GGCGCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	2 cut(s)	306, 491
SspDI	GGCGCC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	129
TaqI	TCGA	1 cut(s)	472
TasI	AATT	1 cut(s)	336
TatI	WGTACW	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	22, 435
TseI	GCWGC	5 cut(s)	56, 59, 62, 89, 379
TspDTI	ATGAA	2 cut(s)	39, 173
TspRI	CASTG	2 cut(s)	22, 435
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.