Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014910

Physical Location & Seq

Genomic Coordinates Forward (+)

47207634 .. 47209972

Gene Structure 2339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTTCTACCTTCAGCGGCGATGAGACGGCGCCCTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTTTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGGGTAGGTGTTGCATCTATGGGAGTCATGAGGCCTGAGCTGGTCATGAAATCCATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGACTTATTATTGCTGTTATCATCAGTACCGGGATTAATCCCAAGGCAAAGTCGTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCTTGTGGTCTTGCGGGGCTCTCTGCTGGAATGGCAATTGGTATTGTTGGTGATGCTGGTGTGAGAGCTAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATCCTCATTCTCATTTTTGCTGAAGCATTGGCACTGTATGGCCTCATTGTTGGAATCATCTTATCCTCCCGAGCTGGCCAATCCAGAGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

165

Amino Acids

16.64

Weight (kDa)

8.62

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	17 - 76	3.9e-15	ATP synthase subunit C
ATP-synt_C	PF00137	97 - 155	3.1e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910 AT2G16510 AT4G34720 AT4G34720 AT4G38920 AT4G38920
malus_domestica	MD05G1055000.v1.1 MD10G1062400.v1.1
pyrus_communis	pycom05g04550
rosa_chinensis	RchiOBHm_Chr6g0268231
rosa_laevigata	RLG00000013924
rosa_multiflora	Rmu_sc0007606.1_g000004 Rmu_sc0010202.1_g000001
rosa_roxburghii	Rroxscaffold_7G00199940
rosa_rugosa	Rorug06G0039800.1
rosa_wichuraiana	Rw6G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	31, 53
AciI	CCGC	4 cut(s)	18, 57, 62, 314
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	89, 151, 368, 476
AluI	AGCT	4 cut(s)	89, 151, 368, 476
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	4 cut(s)	63, 143, 442, 478
ApeKI	GCWGC	3 cut(s)	59, 89, 379
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	480
BanI	GGYRCC	2 cut(s)	31, 53
BanII	GRGCYC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	46, 76, 391
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	6 cut(s)	19, 57, 60, 63, 90, 380
BlsI	GCNGC	6 cut(s)	20, 58, 61, 64, 91, 381
Bme1390I	CCNGG	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	33, 55
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	134, 343
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	49, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	49, 246
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	46, 76, 391
BshFI	GGCC	4 cut(s)	65, 145, 444, 480
BshNI	GGYRCC	2 cut(s)	31, 53
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	65, 145, 444, 480
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	4 cut(s)	18, 57, 62, 314
BspANI	GGCC	4 cut(s)	65, 145, 444, 480
BspCNI	CTCAG	1 cut(s)	139
BspHI	TCATGA	2 cut(s)	138, 156
BspLI	GGNNCC	2 cut(s)	33, 55
BspPI	GGATC	1 cut(s)	397
BspT107I	GGYRCC	2 cut(s)	31, 53
BssECI	CCNNGG	2 cut(s)	49, 246
BssMI	GATC	1 cut(s)	402
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 332
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	46, 76, 391
BsuRI	GGCC	4 cut(s)	65, 145, 444, 480
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	478
CciI	TCATGA	2 cut(s)	138, 156
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	139, 157
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	147
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	142, 160
FaiI	YATR	9 cut(s)	83, 96, 131, 140, 158, 182, 204, 279, 441
FatI	CATG	2 cut(s)	138, 156
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	6 cut(s)	19, 57, 60, 63, 90, 380
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	6 cut(s)	19, 57, 60, 63, 90, 380
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	6 cut(s)	19, 57, 60, 63, 90, 380
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	65, 145, 444, 480
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	142, 160
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	135, 456
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	362
Hpy188III	TCNNGA	4 cut(s)	139, 157, 471, 486
HpyAV	CCTTC	2 cut(s)	22, 46
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	125, 281, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 332
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	142, 160
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	3 cut(s)	46, 76, 391
LweI	GCATC	2 cut(s)	134, 343
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	8 cut(s)	59, 77, 135, 275, 301, 416, 455, 478
Mox20I	TGGCCA	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	18, 59
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	62, 332
NarI	GGCGCC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	2 cut(s)	142, 160
NlaIV	GGNNCC	2 cut(s)	33, 55
PagI	TCATGA	2 cut(s)	138, 156
PceI	AGGCCT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	20, 58, 61, 64, 91, 381
PleI	GAGTC	1 cut(s)	143
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	33, 55
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	6 cut(s)	19, 57, 60, 63, 90, 380
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	7 cut(s)	14, 91, 121, 153, 267, 370, 478
SfaNI	GCATC	2 cut(s)	134, 343
SfoI	GGCGCC	1 cut(s)	33
Sse9I	AATT	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	4 cut(s)	18, 57, 62, 314
SspDI	GGCGCC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	438
TasI	AATT	1 cut(s)	336
TauI	GCSGC	3 cut(s)	21, 59, 65
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	3 cut(s)	59, 89, 379
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.