Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014910

Physical Location & Seq

Genomic Coordinates Forward (+)

18147027 .. 18149315

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCTGCGCTCGTCTTCTCATGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGTTATGGCTGGTGTGTTGGGTATCTATGGTTTGATTATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGCTAAATCCTACTACCTCTTCGACGGATATGCTCATCTCTCTTCTGGTCTTGCTTGTGGGCTAGCTGGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTGTCCTCCCGAGCTGGTCAGTCCAGAGCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

164

Amino Acids

16.57

Weight (kDa)

8.62

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	16 - 75	3.8e-15	ATP synthase subunit C
ATP-synt_C	PF00137	96 - 154	3e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910 AT2G16510 AT4G34720 AT4G34720 AT4G38920 AT4G38920
malus_domestica	MD05G1055000.v1.1 MD10G1062400.v1.1
pyrus_communis	pycom05g04550
rosa_chinensis	RchiOBHm_Chr6g0268231
rosa_laevigata	RLG00000013924
rosa_multiflora	Rmu_sc0007606.1_g000004 Rmu_sc0010202.1_g000001
rosa_roxburghii	Rroxscaffold_7G00199940
rosa_rugosa	Rorug06G0039800.1
rosa_wichuraiana	Rw6G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	27, 57
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	92, 229
AfiI	CCNNNNNNNGG	1 cut(s)	38
AluBI	AGCT	6 cut(s)	86, 311, 323, 385, 425, 473
AluI	AGCT	6 cut(s)	86, 311, 323, 385, 425, 473
Alw26I	GTCTC	2 cut(s)	17, 446
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	3 cut(s)	140, 330, 363
ApeKI	GCWGC	3 cut(s)	53, 59, 86
AspLEI	GCGC	2 cut(s)	53, 64
AspS9I	GGNCC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	163
AsuNHI	GCTAGC	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	40, 46, 73
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	17, 446
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	4 cut(s)	54, 57, 60, 87
BlsI	GCNGC	4 cut(s)	55, 58, 61, 88
Bme1390I	CCNGG	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	131, 340
BmtI	GCTAGC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	404
BsaI	GGTCTC	2 cut(s)	17, 446
BsaJI	CCNNGG	2 cut(s)	46, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	46, 243
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	40, 46, 73
BshFI	GGCC	3 cut(s)	142, 332, 365
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	143, 231
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	109, 152
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	17, 446
BsmFI	GGGAC	2 cut(s)	109, 152
BsnI	GGCC	3 cut(s)	142, 332, 365
Bso31I	GGTCTC	2 cut(s)	17, 446
BsoBI	CYCGRG	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	27, 57
BspANI	GGCC	3 cut(s)	142, 332, 365
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	461
BspTNI	GGTCTC	2 cut(s)	17, 446
BsrBI	CCGCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	46, 243
BssMI	GATC	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	46, 243
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	269, 292
BstC8I	GCNNGC	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 64
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	2 cut(s)	17, 446
BstMBI	GATC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 59, 329
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	40, 46, 73
BstV2I	GAAGAC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	142, 332, 365
BtgZI	GCGATG	2 cut(s)	33, 363
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	2 cut(s)	53, 64
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	91, 228
CviAII	CATG	1 cut(s)	75
CviQI	GTAC	2 cut(s)	91, 228
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	269, 292
EarI	CTCTTC	2 cut(s)	269, 292
Eco130I	CCWWGG	2 cut(s)	46, 243
Eco31I	GGTCTC	2 cut(s)	17, 446
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	46, 243
ErhI	CCWWGG	2 cut(s)	46, 243
FaeI	CATG	1 cut(s)	78
FaiI	YATR	9 cut(s)	76, 80, 128, 179, 201, 276, 335, 398, 436
FaqI	GGGAC	2 cut(s)	109, 152
FatI	CATG	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	54, 57, 60, 87
Fsp4HI	GCNGC	4 cut(s)	54, 57, 60, 87
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	52, 63
GluI	GCNGC	4 cut(s)	54, 57, 60, 87
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	142, 332, 365
HapII	CCGG	2 cut(s)	143, 231
HhaI	GCGC	2 cut(s)	53, 64
Hin1II	CATG	1 cut(s)	78
Hin6I	GCGC	2 cut(s)	51, 62
HinP1I	GCGC	2 cut(s)	51, 62
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	400
HpaII	CCGG	2 cut(s)	143, 231
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	3 cut(s)	451, 468, 483
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	272, 452
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 59, 329
Hsp92II	CATG	1 cut(s)	78
HspAI	GCGC	2 cut(s)	51, 62
Kzo9I	GATC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	34, 83
Lsp1109I	GCAGC	3 cut(s)	40, 46, 73
LweI	GCATC	2 cut(s)	131, 340
MaeI	CTAG	1 cut(s)	308
MalI	GATC	1 cut(s)	455
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	1 cut(s)	453
MboII	GAAGA	4 cut(s)	28, 61, 256, 279
MlsI	TGGCCA	1 cut(s)	332
MluNI	TGGCCA	1 cut(s)	332
MnlI	CCTC	4 cut(s)	132, 272, 419, 475
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	59, 323
MspI	CCGG	2 cut(s)	143, 231
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	48, 59, 329
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	1 cut(s)	453
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	400
Pfl23II	CGTACG	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	55, 58, 61, 88
PspLI	CGTACG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	92, 229
RsaNI	GTAC	2 cut(s)	91, 228
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	54, 57, 60, 87
Sau3AI	GATC	1 cut(s)	453
Sau96I	GGNCC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	9 cut(s)	11, 88, 264, 313, 325, 340, 387, 427, 475
SfaNI	GCATC	2 cut(s)	131, 340
SsiI	CCGC	2 cut(s)	27, 57
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	46, 243
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	267
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	3 cut(s)	53, 59, 86
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.