Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014910

Physical Location & Seq

Genomic Coordinates Reverse (-)

16567792 .. 16569334

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCCGCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATGGCTGGAGTGTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCTTGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTCAGGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTATTTTCGCAGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTTTCCTCACGAGCTGGCCAGTCTAGAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

164

Amino Acids

16.57

Weight (kDa)

8.62

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	2 - 53	1.9e-12	ATP synthase subunit C
ATP-synt_C	PF00137	74 - 132	2.2e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19910 AT2G16510 AT4G34720 AT4G34720 AT4G38920 AT4G38920
malus_domestica	MD05G1055000.v1.1 MD10G1062400.v1.1
pyrus_communis	pycom05g04550
rosa_chinensis	RchiOBHm_Chr6g0268231
rosa_laevigata	RLG00000013924
rosa_multiflora	Rmu_sc0007606.1_g000004 Rmu_sc0010202.1_g000001
rosa_roxburghii	Rroxscaffold_7G00199940
rosa_rugosa	Rorug06G0039800.1
rosa_wichuraiana	Rw6G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	15, 60, 99
AcoI	YGGCCR	2 cut(s)	330, 475
AfaI	GTAC	1 cut(s)	229
AfeI	AGCGCT	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	38, 360
AluBI	AGCT	6 cut(s)	29, 86, 323, 385, 473, 488
AluI	AGCT	6 cut(s)	29, 86, 323, 385, 473, 488
Alw26I	GTCTC	2 cut(s)	133, 320
Aor51HI	AGCGCT	1 cut(s)	426
AoxI	GGCC	2 cut(s)	330, 475
ApeKI	GCWGC	4 cut(s)	53, 56, 86, 376
AspLEI	GCGC	2 cut(s)	53, 427
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	163, 359
BalI	TGGCCA	2 cut(s)	332, 477
BauI	CACGAG	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	40, 68, 73, 388
BccI	CCATC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciVI	GTATCC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	133, 320
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	2 cut(s)	54, 428
BfuI	GTATCC	1 cut(s)	266
BisI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	6 cut(s)	17, 55, 58, 61, 88, 378
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	404
BsaI	GGTCTC	2 cut(s)	133, 320
BsaJI	CCNNGG	2 cut(s)	46, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 360
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	46, 243
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	2 cut(s)	38, 360
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	135, 333, 386
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	4 cut(s)	40, 68, 73, 388
BshFI	GGCC	2 cut(s)	332, 477
BsiSI	CCGG	2 cut(s)	231, 354
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	38, 360
BsmAI	GTCTC	2 cut(s)	133, 320
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	332, 477
Bso31I	GGTCTC	2 cut(s)	133, 320
Bsp143I	GATC	1 cut(s)	207
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	3 cut(s)	15, 60, 99
BspANI	GGCC	2 cut(s)	332, 477
BspCNI	CTCAG	3 cut(s)	136, 332, 385
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	58
BspTNI	GGTCTC	2 cut(s)	133, 320
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	46, 243
BssMI	GATC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	429, 475
BstDEI	CTNAG	5 cut(s)	144, 249, 319, 372, 381
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	2 cut(s)	54, 428
BstHHI	GCGC	2 cut(s)	53, 427
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	133, 320
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 59, 329, 382
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	40, 68, 73, 388
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	332, 477
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	429, 475
CfoI	GCGC	2 cut(s)	53, 427
Cfr10I	RCCGGY	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	228
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	5 cut(s)	144, 249, 319, 372, 381
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	2 cut(s)	330, 475
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	133, 320
Eco47III	AGCGCT	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaiI	YATR	6 cut(s)	80, 93, 128, 137, 179, 201
FaqI	GGGAC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	52, 426
GluI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	2 cut(s)	54, 428
HaeIII	GGCC	2 cut(s)	332, 477
HapII	CCGG	2 cut(s)	231, 354
HhaI	GCGC	2 cut(s)	53, 427
Hin6I	GCGC	2 cut(s)	51, 425
HinP1I	GCGC	2 cut(s)	51, 425
HinfI	GANTC	2 cut(s)	400, 453
HpaII	CCGG	2 cut(s)	231, 354
HphI	GGTGA	2 cut(s)	163, 359
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	468, 483
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 59, 329, 382
HpyF3I	CTNAG	5 cut(s)	144, 249, 319, 372, 381
HpySE526I	ACGT	1 cut(s)	8
HspAI	GCGC	2 cut(s)	51, 425
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	2 cut(s)	34, 83
Lsp1109I	GCAGC	4 cut(s)	40, 68, 73, 388
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	8
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	28
MlsI	TGGCCA	2 cut(s)	332, 477
MluNI	TGGCCA	2 cut(s)	332, 477
MnlI	CCTC	3 cut(s)	56, 272, 475
Mox20I	TGGCCA	2 cut(s)	332, 477
MscI	TGGCCA	2 cut(s)	332, 477
MseI	TTAA	1 cut(s)	237
Msp20I	TGGCCA	2 cut(s)	332, 477
MspA1I	CMGCKG	2 cut(s)	15, 323
MspI	CCGG	2 cut(s)	231, 354
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	48, 59, 329, 382
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	400, 453
PkrI	GCNGC	6 cut(s)	17, 55, 58, 61, 88, 378
PspN4I	GGNNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	6 cut(s)	16, 54, 57, 60, 87, 377
Sau3AI	GATC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	9 cut(s)	11, 31, 88, 145, 264, 325, 387, 475, 490
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	54
SsiI	CCGC	3 cut(s)	15, 60, 99
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	11
TauI	GCSGC	2 cut(s)	18, 62
TfiI	GAWTC	2 cut(s)	400, 453
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseI	GCWGC	4 cut(s)	53, 56, 86, 376
TspDTI	ATGAA	2 cut(s)	36, 170
XbaI	TCTAGA	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.