AT1G19960

ribosomal small subunit assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018741
Physical Location & Seq
Forward (+)
6927736 .. 6928656
921 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19960.1

Sequence Viewer

Length: 195 bp
ATGAGCGACCCTAGCGGCCAATCTTCAACAACGACTGTCGGTGGAATTGCCGGCGGTAGCGGTTGTAACGGAGGAGGTGGTGGAAGTGGCAGTGGAAGCGGCGGCTCCTTTGGGAATCAGCCGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGGAGTACTCGGCATCTCATCCGACTCCACCAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000075 GO:0000077 GO:0000184 GO:0000278 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006915 GO:0006919 GO:0006950 GO:0006974 GO:0006978 GO:0006996 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0008494 GO:0008630 GO:0008656 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010942 GO:0010948 GO:0010950 GO:0010952 GO:0012501 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016504 GO:0016505 GO:0019222 GO:0019439 GO:0019538 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0023052 GO:0030162 GO:0030234 GO:0030330 GO:0030490 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0042254 GO:0042255 GO:0042274 GO:0042770 GO:0042771 GO:0042772 GO:0042886 GO:0042981 GO:0043028 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043280 GO:0043281 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045047 GO:0045182 GO:0045184 GO:0045727 GO:0045786 GO:0045862 GO:0045930 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090079 GO:0090150 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097190 GO:0097193 GO:0098772 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000112 GO:2000116 GO:2000134 GO:2001056
KEGG Pathways
Metabolic & Signaling
ko03010 ko04010 ko04014 ko05203 map03010 map04010 map04014 map05203
Pfam Domains
Protein Families
Ribosomal_S27e

Protein Analysis

64

Amino Acids

6.02

Weight (kDa)

10.04

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018741)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19960 AT1G65390 AT1G65390 AT1G65390 AT2G32140 AT5G45070 AT5G45080 AT5G45090 AT5G45090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 15, 54, 60, 99, 102
AcoI YGGCCR 1 cut(s) 16
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 27
AoxI GGCC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 148
BfaI CTAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 16, 100, 103
BlsI GCNGC 3 cut(s) 17, 101, 104
BmcAI AGTACT 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 87, 139
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 5 cut(s) 15, 54, 60, 99, 102
BspANI GGCC 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 12, 96
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 50
Csp6I GTAC 1 cut(s) 161
CviJI RGCY 4 cut(s) 18, 105, 121, 155
CviKI_1 RGCY 4 cut(s) 18, 105, 121, 155
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 16, 100, 103
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 16, 100, 103
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 16, 100, 103
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 51
HinfI GANTC 2 cut(s) 115, 179
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 96
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 2 cut(s) 64, 141
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 15
MluCI AATT 2 cut(s) 45, 190
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 4 cut(s) 65, 68, 117, 132
MroNI GCCGGC 1 cut(s) 50
MseI TTAA 1 cut(s) 193
MspI CCGG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 12, 96
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 1 cut(s) 128
NgoMIV GCCGGC 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 2 cut(s) 144, 147
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 17, 101, 104
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 193
SatI GCNGC 3 cut(s) 16, 100, 103
Sau3AI GATC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 162
SchI GAGTC 1 cut(s) 173
SetI ASST 2 cut(s) 79, 138
SfaNI GCATC 1 cut(s) 177
SgeI CNNG 6 cut(s) 24, 63, 135, 158, 168, 176
Sse9I AATT 2 cut(s) 45, 190
SsiI CCGC 5 cut(s) 15, 54, 60, 99, 102
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 37
TasI AATT 2 cut(s) 45, 190
TatI WGTACW 1 cut(s) 160
TauI GCSGC 3 cut(s) 18, 102, 105
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TscAI CASTG 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 97
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.