AT5G45070

Phloem protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018741
Physical Location & Seq
Reverse (-)
18187630 .. 18189523
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45070.1

Sequence Viewer

Length: 1065 bp
ATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGTGTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGCCATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCTGGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGACTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCAAGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACTCAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAGAAATATAAAAATGATCCTGAAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGATTGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTCAAAAAGCGCTGTGGCAAATCGCGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAAGGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAATGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATGATTAACACTCACGCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACCAGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAAGAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGCGAAGAAATTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAGACTTTGAGGCACCGCAAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTTTTGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2 TIR

Protein Analysis

354

Amino Acids

40.11

Weight (kDa)

6.5

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 15 - 182 3.7e-37 TIR domain
TIR_2 PF13676 16 - 107 1.8e-10 TIR domain
PP2 PF14299 198 - 352 1.5e-28 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018741)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19960 AT1G65390 AT1G65390 AT1G65390 AT2G32140 AT5G45070 AT5G45080 AT5G45090 AT5G45090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 952
AccII CGCG 1 cut(s) 548
AciI CCGC 4 cut(s) 206, 291, 870, 956
AclI AACGTT 1 cut(s) 129
AclWI GGATC 3 cut(s) 181, 194, 395
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 866
AfaI GTAC 1 cut(s) 776
AfeI AGCGCT 1 cut(s) 534
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 3 cut(s) 527, 582, 1006
AjnI CCWGG 2 cut(s) 650, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 881, 913
AluBI AGCT 4 cut(s) 93, 259, 431, 1000
AluI AGCT 4 cut(s) 93, 259, 431, 1000
Alw26I GTCTC 4 cut(s) 16, 299, 604, 936
AlwI GGATC 3 cut(s) 181, 194, 395
Ama87I CYCGRG 1 cut(s) 518
Aor51HI AGCGCT 1 cut(s) 534
AoxI GGCC 2 cut(s) 261, 457
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 577
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 535, 1060
AspS9I GGNCC 4 cut(s) 38, 457, 598, 648
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 3 cut(s) 38, 598, 648
BaeGI GKGCMC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 952
BauI CACGAG 1 cut(s) 748
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 652, 765
BcoDI GTCTC 4 cut(s) 16, 299, 604, 936
BfaI CTAG 1 cut(s) 800
BfoI RGCGCY 1 cut(s) 536
BglII AGATCT 3 cut(s) 70, 163, 978
BisI GCNGC 2 cut(s) 6, 870
BlsI GCNGC 2 cut(s) 7, 871
Bme1390I CCNGG 2 cut(s) 652, 765
Bme18I GGWCC 3 cut(s) 38, 598, 648
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 4 cut(s) 38, 457, 598, 648
BmiI GGNNCC 4 cut(s) 39, 188, 600, 954
BmrFI CCNGG 2 cut(s) 652, 765
BpmI CTGGAG 1 cut(s) 673
Bpu10I CCTNAGC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 27, 119
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 16, 299
BsaJI CCNNGG 2 cut(s) 61, 764
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 1 cut(s) 308
BseBI CCWGG 2 cut(s) 652, 765
BseDI CCNNGG 2 cut(s) 61, 764
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 2 cut(s) 452, 1002
BseSI GKGCMC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 548
BshFI GGCC 2 cut(s) 263, 459
BshNI GGYRCC 1 cut(s) 952
BsiHKCI CYCGRG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 51, 584
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 4 cut(s) 16, 299, 604, 936
BsmFI GGGAC 2 cut(s) 51, 584
BsnI GGCC 2 cut(s) 263, 459
Bso31I GGTCTC 2 cut(s) 16, 299
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
Bsp68I TCGCGA 1 cut(s) 548
BspACI CCGC 4 cut(s) 206, 291, 870, 956
BspANI GGCC 2 cut(s) 263, 459
BspCNI CTCAG 2 cut(s) 453, 1003
BspFNI CGCG 1 cut(s) 548
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 4 cut(s) 39, 188, 600, 954
BspPI GGATC 3 cut(s) 181, 194, 395
BspT107I GGYRCC 1 cut(s) 952
BspTNI GGTCTC 2 cut(s) 16, 299
BsrDI GCAATG 1 cut(s) 618
BssECI CCNNGG 2 cut(s) 61, 764
BssMI GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
BssSI CACGAG 1 cut(s) 748
Bst2BI CACGAG 1 cut(s) 748
Bst2UI CCWGG 2 cut(s) 652, 765
Bst6I CTCTTC 1 cut(s) 1013
BstC8I GCNNGC 2 cut(s) 105, 261
BstDEI CTNAG 5 cut(s) 89, 222, 250, 461, 1011
BstFNI CGCG 1 cut(s) 548
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 535, 1060
BstKTI GATC 7 cut(s) 73, 166, 189, 216, 270, 403, 981
BstMAI GTCTC 4 cut(s) 16, 299, 604, 936
BstMBI GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 2 cut(s) 652, 765
BstSCI CCNGG 2 cut(s) 650, 763
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 548
BstX2I RGATCY 4 cut(s) 70, 163, 186, 978
BstYI RGATCY 4 cut(s) 70, 163, 186, 978
BsuRI GGCC 2 cut(s) 263, 459
BtgZI GCGATG 1 cut(s) 563
BtsIMutI CAGTG 1 cut(s) 1008
BtuMI TCGCGA 1 cut(s) 548
Cac8I GCNNGC 2 cut(s) 105, 261
CciI TCATGA 1 cut(s) 501
CfoI GCGC 2 cut(s) 535, 1060
Cfr13I GGNCC 4 cut(s) 38, 457, 598, 648
CseI GACGC 2 cut(s) 850, 980
Csp6I GTAC 1 cut(s) 775
CviAII CATG 2 cut(s) 109, 502
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 5 cut(s) 89, 222, 250, 461, 1011
DpnI GATC 7 cut(s) 72, 165, 188, 215, 269, 402, 980
DpnII GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
Eco31I GGTCTC 2 cut(s) 16, 299
Eco47I GGWCC 3 cut(s) 38, 598, 648
Eco47III AGCGCT 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 866
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 2 cut(s) 38, 457
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 650, 763
FaeI CATG 2 cut(s) 112, 505
FaiI YATR 8 cut(s) 110, 125, 137, 393, 503, 666, 857, 911
FaqI GGGAC 2 cut(s) 51, 584
FatI CATG 2 cut(s) 108, 501
Fnu4HI GCNGC 2 cut(s) 6, 870
Fsp4HI GCNGC 2 cut(s) 6, 870
FspBI CTAG 1 cut(s) 800
GlaI GCGC 2 cut(s) 534, 1059
GluI GCNGC 2 cut(s) 6, 870
GsuI CTGGAG 1 cut(s) 673
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 2 cut(s) 263, 459
HgaI GACGC 2 cut(s) 850, 980
HhaI GCGC 2 cut(s) 535, 1060
Hin1II CATG 2 cut(s) 112, 505
Hin6I GCGC 2 cut(s) 533, 1058
HinP1I GCGC 2 cut(s) 533, 1058
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 2 cut(s) 91, 429
HinfI GANTC 6 cut(s) 194, 304, 437, 514, 523, 572
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 62, 241, 631
Hpy188III TCNNGA 8 cut(s) 98, 404, 502, 518, 520, 547, 638, 988
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 339, 547, 841
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 279, 326, 605, 698, 1046
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 5 cut(s) 89, 222, 250, 461, 1011
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 112, 505
HspAI GCGC 2 cut(s) 533, 1058
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
MaeI CTAG 1 cut(s) 800
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 77, 832
MalI GATC 7 cut(s) 72, 165, 188, 215, 269, 402, 980
MboI GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
MboII GAAGA 6 cut(s) 3, 6, 304, 835, 898, 1030
MflI RGATCY 4 cut(s) 70, 163, 186, 978
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 6 cut(s) 577, 693, 755, 890, 919, 1047
MlyI GAGTC 2 cut(s) 203, 446
MmeI TCCRAC 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 3 cut(s) 171, 282, 708
MspR9I CCNGG 2 cut(s) 652, 765
MvaI CCWGG 2 cut(s) 652, 765
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
NlaIII CATG 2 cut(s) 112, 505
NlaIV GGNNCC 4 cut(s) 39, 188, 600, 954
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 832
NruI TCGCGA 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 518
PagI TCATGA 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 4 cut(s) 304, 514, 523, 572
PkrI GCNGC 2 cut(s) 7, 871
PleI GAGTC 2 cut(s) 202, 445
PpsI GAGTC 2 cut(s) 202, 445
PpuMI RGGWCCY 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 282
Psp1406I AACGTT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 650, 763
PspGI CCWGG 2 cut(s) 650, 763
PspN4I GGNNCC 4 cut(s) 39, 188, 600, 954
PspPI GGNCC 4 cut(s) 38, 457, 598, 648
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 4 cut(s) 70, 163, 186, 978
RruI TCGCGA 1 cut(s) 548
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
SaqAI TTAA 3 cut(s) 171, 282, 708
SatI GCNGC 2 cut(s) 6, 870
Sau3AI GATC 7 cut(s) 70, 163, 186, 213, 267, 400, 978
Sau96I GGNCC 4 cut(s) 38, 457, 598, 648
SchI GAGTC 2 cut(s) 203, 446
ScrFI CCNGG 2 cut(s) 652, 765
SduI GDGCHC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 3 cut(s) 38, 598, 648
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 3 cut(s) 42, 98, 518
SmoI CTYRAG 3 cut(s) 42, 98, 518
Sse9I AATT 6 cut(s) 577, 693, 755, 890, 919, 1047
SsiI CCGC 4 cut(s) 206, 291, 870, 956
SspMI CTAG 1 cut(s) 800
StyD4I CCNGG 2 cut(s) 650, 763
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 519, 575, 690, 989
TasI AATT 6 cut(s) 577, 693, 755, 890, 919, 1047
TauI GCSGC 1 cut(s) 872
TfiI GAWTC 4 cut(s) 304, 514, 523, 572
Tru1I TTAA 3 cut(s) 171, 282, 708
Tru9I TTAA 3 cut(s) 171, 282, 708
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 8 cut(s) 40, 124, 490, 518, 522, 566, 843, 879
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 1015
VpaK11BI GGWCC 3 cut(s) 38, 598, 648
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.