AT5G45090

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018741
Physical Location & Seq
Reverse (-)
18202617 .. 18205000
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45090.2

Sequence Viewer

Length: 999 bp
ATGAGTGAGGTTGCGGTGGTACTGGAGAAACAAGAAGGCGGAGGCGGAGGTGGACCGTCTTCGATACAATGTCCTATGCTCAAATCAACTAACTATACCGTATGGGACATGAGGATGAGAAGTACACTTAAGGTTCATAAGTCGCAAGAAGAAGATGTGAGCAAAGGTCTGATCAATTTTCTCGAACCGGTCTTACAAAACAAAAATATAAATGTCTTCATAGACGAGGAAGAGGTAAGAGGCAAAGGTCTAAAGAATCTGTTTAAAAGAATCCAGGACTCAAAGATCTCACTCGCGATCTTTTCAGAGTCAAAATGTGATTTTAATGATTTACTGAAGAATAATGAATCCGCCGATGAAGCGATTCCTATATTCTACAAGGTAGATGCGACTGGAGACTTGGCCGATCTCCAAAACAGCGTAAAGTGCAAGAAAGATCTCATAAATTCTGCCGTGGAGGAAATGAGTAAATTGCTGGCGAATATTTCTGTGGGAGTATACAGAGAAAAAGAAGCAAATAGCAAATGTTTCATGGTCCCTGCAAGGAAACTCCAGATGAGTCACTCGGAGAAACTGATAAATTGGACATGGAGTTCTATCTACGAGACACCAAATGACGCTGCAATTGAAGTTGCCATGTTGAATGAAGTCCACTGGCTGCACATGTCTGGAAATTTTCACACAAGAAATCTGACACCAGGGACAAAATATGAGGTTGTCTTTTTGGTGAGCTTAGATGATACATCTTCAGGATGGGAGCAGCCGGTGAATCTGAACTTGAAGGTAATTAATCCAGATGGAACTGAGAGTTTGCAGGAGCGAGAAACAAGCTTGGAATGTCACATAGGTGAAAACTGGGTGGATATTCAAGCTGGAGTTTTGGTGGCACCTCCTAGGAATGCGGCCGCAAAGATGACTTTCACCATGTATCAGTATGTGACTAGTGACCGGAAGAGCGGGCTCGTGGTCAAAGGTGTTGCTATTCGTCCCATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2 TIR

Protein Analysis

332

Amino Acids

37.15

Weight (kDa)

5.53

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 22 - 121 7.8e-09 TIR domain
PP2 PF14299 153 - 308 3.9e-33 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018741)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19960 AT1G65390 AT1G65390 AT1G65390 AT2G32140 AT5G45070 AT5G45080 AT5G45090 AT5G45090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 886
AccBSI CCGCTC 1 cut(s) 957
AccI GTMKAC 1 cut(s) 498
AccII CGCG 1 cut(s) 296
AciI CCGC 7 cut(s) 14, 39, 45, 351, 902, 906, 957
AcoI YGGCCR 2 cut(s) 402, 903
AcsI RAATTY 2 cut(s) 445, 673
AcuI CTGAAG 2 cut(s) 356, 732
AfaI GTAC 2 cut(s) 21, 124
AflII CTTAAG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 663
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 4 cut(s) 629, 643, 781, 869
AhlI ACTAGT 1 cut(s) 941
AjnI CCWGG 2 cut(s) 273, 697
AleI CACNNNNGTG 1 cut(s) 846
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 3 cut(s) 732, 831, 872
AluI AGCT 3 cut(s) 732, 831, 872
Alw26I GTCTC 2 cut(s) 390, 599
AoxI GGCC 2 cut(s) 402, 903
ApeKI GCWGC 3 cut(s) 620, 658, 760
ApoI RAATTY 2 cut(s) 445, 673
AseI ATTAAT 1 cut(s) 789
AsiGI ACCGGT 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 363
AspA2I CCTAGG 1 cut(s) 893
AspS9I GGNCC 2 cut(s) 53, 535
AsuHPI GGTGA 4 cut(s) 739, 778, 860, 913
AvaII GGWCC 2 cut(s) 53, 535
AvrII CCTAGG 1 cut(s) 893
BanI GGYRCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 963
BauI CACGAG 1 cut(s) 962
BbsI GAAGAC 2 cut(s) 51, 208
BbvI GCAGC 3 cut(s) 607, 645, 772
BccI CCATC 2 cut(s) 747, 791
BceAI ACGGC 1 cut(s) 437
BciT130I CCWGG 2 cut(s) 275, 699
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 390, 599
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 2 cut(s) 894, 942
BfrI CTTAAG 1 cut(s) 128
BglII AGATCT 2 cut(s) 285, 436
BisI GCNGC 5 cut(s) 621, 659, 761, 903, 906
BlnI CCTAGG 1 cut(s) 893
BlsI GCNGC 5 cut(s) 622, 660, 762, 904, 907
Bme1390I CCNGG 2 cut(s) 275, 699
Bme18I GGWCC 2 cut(s) 53, 535
BmgT120I GGNCC 2 cut(s) 53, 535
BmiI GGNNCC 2 cut(s) 537, 888
BmrFI CCNGG 2 cut(s) 275, 699
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 865
BpiI GAAGAC 2 cut(s) 51, 208
BpmI CTGGAG 4 cut(s) 44, 414, 536, 894
BsaJI CCNNGG 3 cut(s) 453, 698, 893
BsaWI WCCGGW 2 cut(s) 187, 948
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bse118I RCCGGY 2 cut(s) 187, 763
Bse1I ACTGG 4 cut(s) 27, 397, 659, 860
BseBI CCWGG 2 cut(s) 275, 699
BseDI CCNNGG 3 cut(s) 453, 698, 893
BseGI GGATG 2 cut(s) 120, 758
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 4 cut(s) 27, 397, 659, 860
BseX3I CGGCCG 1 cut(s) 903
BseXI GCAGC 3 cut(s) 607, 645, 772
BsgI GTGCAG 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 906
BshFI GGCC 2 cut(s) 404, 905
BshNI GGYRCC 1 cut(s) 886
BshTI ACCGGT 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 906
BsiSI CCGG 3 cut(s) 188, 764, 949
BslFI GGGAC 4 cut(s) 119, 521, 715, 972
BsmAI GTCTC 2 cut(s) 390, 599
BsmFI GGGAC 4 cut(s) 119, 521, 715, 972
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 2 cut(s) 404, 905
Bsp1286I GDGCHC 1 cut(s) 963
Bsp143I GATC 5 cut(s) 171, 285, 297, 406, 436
Bsp68I TCGCGA 1 cut(s) 296
BspACI CCGC 7 cut(s) 14, 39, 45, 351, 902, 906, 957
BspANI GGCC 2 cut(s) 404, 905
BspCNI CTCAG 1 cut(s) 796
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 537, 888
BspQI GCTCTTC 1 cut(s) 947
BspT107I GGYRCC 1 cut(s) 886
BspTI CTTAAG 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 957
BsrFI RCCGGY 2 cut(s) 187, 763
BsrI ACTGG 4 cut(s) 27, 397, 659, 860
BssAI RCCGGY 2 cut(s) 187, 763
BssECI CCNNGG 3 cut(s) 453, 698, 893
BssMI GATC 5 cut(s) 171, 285, 297, 406, 436
BssNAI GTATAC 1 cut(s) 499
BssSI CACGAG 1 cut(s) 962
BssT1I CCWWGG 1 cut(s) 893
Bst1107I GTATAC 1 cut(s) 499
Bst2BI CACGAG 1 cut(s) 962
Bst2UI CCWGG 2 cut(s) 275, 699
Bst4CI ACNGT 2 cut(s) 57, 100
Bst6I CTCTTC 2 cut(s) 225, 947
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 477, 959
BstDEI CTNAG 2 cut(s) 733, 804
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 120, 758
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 5 cut(s) 174, 288, 300, 409, 439
BstMAI GTCTC 2 cut(s) 390, 599
BstMBI GATC 5 cut(s) 171, 285, 297, 406, 436
BstMCI CGRYCG 1 cut(s) 906
BstMWI GCNNNNNNNGC 2 cut(s) 359, 426
BstNI CCWGG 2 cut(s) 275, 699
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 2 cut(s) 273, 697
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 607, 645, 772
BstV2I GAAGAC 2 cut(s) 51, 208
BstX2I RGATCY 2 cut(s) 285, 436
BstYI RGATCY 2 cut(s) 285, 436
BstZ17I GTATAC 1 cut(s) 499
BstZI CGGCCG 1 cut(s) 903
BsuRI GGCC 2 cut(s) 404, 905
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 120, 758
BtsIMutI CAGTG 1 cut(s) 652
BtuMI TCGCGA 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 477, 959
CciNI GCGGCCGC 1 cut(s) 903
Cfr10I RCCGGY 2 cut(s) 187, 763
Cfr13I GGNCC 2 cut(s) 53, 535
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 20, 123
CspAI ACCGGT 1 cut(s) 187
CviAII CATG 7 cut(s) 109, 532, 588, 637, 664, 925, 991
CviJI RGCY 8 cut(s) 404, 658, 732, 763, 831, 872, 905, 961
CviKI_1 RGCY 8 cut(s) 404, 658, 732, 763, 831, 872, 905, 961
CviQI GTAC 2 cut(s) 20, 123
DdeI CTNAG 2 cut(s) 733, 804
DpnI GATC 5 cut(s) 173, 287, 299, 408, 438
DpnII GATC 5 cut(s) 171, 285, 297, 406, 436
DraI TTTAAA 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 402, 903
EagI CGGCCG 1 cut(s) 903
Eam1104I CTCTTC 2 cut(s) 225, 947
EarI CTCTTC 2 cut(s) 225, 947
EciI GGCGGA 3 cut(s) 54, 60, 340
EclXI CGGCCG 1 cut(s) 903
Eco130I CCWWGG 1 cut(s) 893
Eco24I GRGCYC 1 cut(s) 963
Eco47I GGWCC 2 cut(s) 53, 535
Eco52I CGGCCG 1 cut(s) 903
Eco57I CTGAAG 2 cut(s) 356, 732
EcoRII CCWGG 2 cut(s) 273, 697
EcoT14I CCWWGG 1 cut(s) 893
EcoT38I GRGCYC 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 893
FaeI CATG 7 cut(s) 112, 535, 591, 640, 667, 928, 994
FaqI GGGAC 4 cut(s) 119, 521, 715, 972
FatI CATG 7 cut(s) 108, 531, 587, 636, 663, 924, 990
FauI CCCGC 1 cut(s) 950
FbaI TGATCA 1 cut(s) 171
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 5 cut(s) 621, 659, 761, 903, 906
FokI GGATG 2 cut(s) 127, 765
FriOI GRGCYC 1 cut(s) 963
Fsp4HI GCNGC 5 cut(s) 621, 659, 761, 903, 906
FspBI CTAG 2 cut(s) 894, 942
GluI GCNGC 5 cut(s) 621, 659, 761, 903, 906
GsuI CTGGAG 4 cut(s) 44, 414, 536, 894
HaeIII GGCC 2 cut(s) 404, 905
HapII CCGG 3 cut(s) 188, 764, 949
HgaI GACGC 1 cut(s) 626
Hin1II CATG 7 cut(s) 112, 535, 591, 640, 667, 928, 994
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 8 cut(s) 256, 270, 278, 308, 347, 364, 559, 769
HpaII CCGG 3 cut(s) 188, 764, 949
HphI GGTGA 4 cut(s) 739, 778, 860, 913
Hpy166II GTNNAC 4 cut(s) 53, 125, 499, 652
Hpy188I TCNGA 5 cut(s) 171, 307, 568, 693, 774
Hpy188III TCNNGA 6 cut(s) 182, 295, 553, 669, 750, 794
Hpy8I GTNNAC 4 cut(s) 53, 125, 499, 652
HpyAV CCTTC 2 cut(s) 29, 775
HpyCH4III ACNGT 2 cut(s) 57, 100
HpyCH4V TGCA 6 cut(s) 429, 542, 623, 661, 814, 994
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 426
HpyF3I CTNAG 2 cut(s) 733, 804
Hsp92II CATG 7 cut(s) 112, 535, 591, 640, 667, 928, 994
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 5 cut(s) 171, 285, 297, 406, 436
LguI GCTCTTC 1 cut(s) 947
LmnI GCTCC 2 cut(s) 757, 817
Lsp1109I GCAGC 3 cut(s) 607, 645, 772
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 894, 942
MaeIII GTNAC 4 cut(s) 560, 839, 937, 944
MalI GATC 5 cut(s) 173, 287, 299, 408, 438
MbiI CCGCTC 1 cut(s) 957
MboI GATC 5 cut(s) 171, 285, 297, 406, 436
MboII GAAGA 8 cut(s) 51, 161, 164, 208, 242, 349, 738, 964
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 2 cut(s) 285, 436
MhlI GDGCHC 1 cut(s) 963
MluCI AATT 7 cut(s) 175, 445, 470, 580, 624, 673, 786
MlyI GAGTC 3 cut(s) 272, 317, 568
MnlI CCTC 9 cut(s) 35, 41, 105, 220, 226, 233, 451, 706, 900
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 4 cut(s) 129, 264, 324, 789
MslI CAYNNNNRTG 2 cut(s) 113, 846
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 3 cut(s) 188, 764, 949
MspR9I CCNGG 2 cut(s) 275, 699
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 2 cut(s) 275, 699
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 359, 426
NdeII GATC 5 cut(s) 171, 285, 297, 406, 436
NlaIII CATG 7 cut(s) 112, 535, 591, 640, 667, 928, 994
NlaIV GGNNCC 2 cut(s) 537, 888
NmuCI GTSAC 4 cut(s) 560, 839, 937, 944
NotI GCGGCCGC 1 cut(s) 903
NruI TCGCGA 1 cut(s) 296
NspI RCATGY 1 cut(s) 667
OliI CACNNNNGTG 1 cut(s) 846
PciI ACATGT 1 cut(s) 663
PciSI GCTCTTC 1 cut(s) 947
PctI GAATGC 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 5 cut(s) 256, 270, 347, 364, 769
PfoI TCCNGGA 1 cut(s) 273
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 5 cut(s) 622, 660, 762, 904, 907
PleI GAGTC 3 cut(s) 272, 316, 567
PpsI GAGTC 3 cut(s) 272, 316, 567
PscI ACATGT 1 cut(s) 663
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 273, 697
PspGI CCWGG 2 cut(s) 273, 697
PspN4I GGNNCC 2 cut(s) 537, 888
PspPI GGNCC 2 cut(s) 53, 535
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
PsuI RGATCY 2 cut(s) 285, 436
RruI TCGCGA 1 cut(s) 296
RsaI GTAC 2 cut(s) 21, 124
RsaNI GTAC 2 cut(s) 20, 123
RseI CAYNNNNRTG 2 cut(s) 113, 846
SapI GCTCTTC 1 cut(s) 947
SaqAI TTAA 4 cut(s) 129, 264, 324, 789
SatI GCNGC 5 cut(s) 621, 659, 761, 903, 906
Sau3AI GATC 5 cut(s) 171, 285, 297, 406, 436
Sau96I GGNCC 2 cut(s) 53, 535
SchI GAGTC 3 cut(s) 272, 317, 568
ScrFI CCNGG 2 cut(s) 275, 699
SduI GDGCHC 1 cut(s) 963
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 2 cut(s) 53, 535
SmiMI CAYNNNNRTG 2 cut(s) 113, 846
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 941
Sse9I AATT 7 cut(s) 175, 445, 470, 580, 624, 673, 786
SsiI CCGC 7 cut(s) 14, 39, 45, 351, 902, 906, 957
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 894, 942
StyD4I CCNGG 2 cut(s) 273, 697
StyI CCWWGG 1 cut(s) 893
TaaI ACNGT 2 cut(s) 57, 100
TaqI TCGA 2 cut(s) 62, 183
TasI AATT 7 cut(s) 175, 445, 470, 580, 624, 673, 786
TatI WGTACW 1 cut(s) 122
TauI GCSGC 2 cut(s) 905, 908
TfiI GAWTC 5 cut(s) 256, 270, 347, 364, 769
Tru1I TTAA 4 cut(s) 129, 264, 324, 789
Tru9I TTAA 4 cut(s) 129, 264, 324, 789
TscAI CASTG 1 cut(s) 659
TseFI GTSAC 4 cut(s) 560, 839, 937, 944
TseI GCWGC 3 cut(s) 620, 658, 760
Tsp45I GTSAC 4 cut(s) 560, 839, 937, 944
TspDTI ATGAA 6 cut(s) 125, 208, 360, 372, 520, 660
TspRI CASTG 1 cut(s) 659
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 53, 535
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 2 cut(s) 445, 673
XceI RCATGY 1 cut(s) 667
XmaJI CCTAGG 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 2 cut(s) 894, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.