AT5G45080

Phloem protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018741
Physical Location & Seq
Reverse (-)
18191355 .. 18193328
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45080.1

Sequence Viewer

Length: 1179 bp
ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGCTTCCGGGGAGCAGATGTCCGCAAACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGAAGCGAACATAAACGTCTTCATAGATGAGAACGAGTTTTTGGGCTCAGAAATGGCTAACCTATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAAGATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTCTCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCTGTAAAATTTCTTGAAGGAAAATTTGGCGATAATTTCAGGGCTCTGGAACGCAATAATCGACACATGCTACCAATAACTCAGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGAACAAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAATTACTGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAACGTAAATTAGTTTCCATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGTCCCTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCATGGTCCCTGCAAGGGATTTAGACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGAGTACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTTACTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACGAGGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCAACCAGTGAATCTAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAACTTGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGCCAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAGAAAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2 TIR

Protein Analysis

392

Amino Acids

44.14

Weight (kDa)

8.6

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 186 8e-37 TIR domain
TIR_2 PF13676 17 - 111 5e-11 TIR domain
PP2 PF14299 238 - 390 3.5e-35 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018741)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19960 AT1G65390 AT1G65390 AT1G65390 AT2G32140 AT5G45070 AT5G45080 AT5G45090 AT5G45090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 787
AccII CGCG 1 cut(s) 209
AciI CCGC 5 cut(s) 79, 336, 800, 1070, 1086
AclWI GGATC 3 cut(s) 294, 460, 1005
AcoI YGGCCR 2 cut(s) 264, 1050
AcsI RAATTY 2 cut(s) 344, 359
AcuI CTGAAG 1 cut(s) 980
AfaI GTAC 4 cut(s) 775, 890, 969, 1115
AfiI CCNNNNNNNGG 5 cut(s) 39, 641, 712, 724, 1036
AgsI TTSAA 7 cut(s) 194, 256, 353, 530, 809, 823, 1015
AhdI GACNNNNNGTC 1 cut(s) 1145
AjnI CCWGG 1 cut(s) 877
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 345, 377
AluBI AGCT 5 cut(s) 96, 205, 262, 884, 958
AluI AGCT 5 cut(s) 96, 205, 262, 884, 958
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 3 cut(s) 294, 460, 1005
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 5 cut(s) 41, 264, 292, 1027, 1050
ApoI RAATTY 2 cut(s) 344, 359
AspLEI GCGC 2 cut(s) 211, 580
AspS9I GGNCC 5 cut(s) 41, 489, 652, 703, 715
AsuC2I CCSGG 3 cut(s) 65, 449, 450
AsuHPI GGTGA 1 cut(s) 1093
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 4 cut(s) 489, 652, 703, 715
AxyI CCTNAGG 1 cut(s) 45
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 3 cut(s) 164, 207, 382
BbsI GAAGAC 2 cut(s) 127, 1125
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 5 cut(s) 320, 605, 785, 927, 971
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 879
BcnI CCSGG 3 cut(s) 65, 449, 450
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 212, 927
Bme1390I CCNGG 4 cut(s) 65, 449, 450, 879
Bme18I GGWCC 4 cut(s) 489, 652, 703, 715
BmeRI GACNNNNNGTC 1 cut(s) 1145
BmeT110I CYCGRG 1 cut(s) 448
BmgT120I GGNCC 5 cut(s) 41, 489, 652, 703, 715
BmiI GGNNCC 7 cut(s) 42, 646, 654, 705, 717, 789, 1068
BmrFI CCNGG 4 cut(s) 65, 449, 450, 879
BmrI ACTGGG 1 cut(s) 1045
BmuI ACTGGG 1 cut(s) 1045
BpiI GAAGAC 2 cut(s) 127, 1125
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 133, 621
BpuMI CCSGG 3 cut(s) 65, 449, 450
BsaBI GATNNNNATC 1 cut(s) 311
BsaJI CCNNGG 8 cut(s) 15, 64, 225, 448, 468, 648, 699, 711
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 1047, 1077
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 641, 712, 724, 1036
Bse1I ACTGG 4 cut(s) 543, 839, 944, 1040
Bse21I CCTNAGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 879
BseDI CCNNGG 8 cut(s) 15, 64, 225, 448, 468, 648, 699, 711
BseGI GGATG 1 cut(s) 938
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 5 cut(s) 39, 641, 712, 724, 1036
BseMII CTCAG 5 cut(s) 59, 177, 192, 431, 738
BseNI ACTGG 4 cut(s) 543, 839, 944, 1040
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 991
BshFI GGCC 5 cut(s) 43, 266, 294, 1029, 1052
BshNI GGYRCC 1 cut(s) 787
BsiEI CGRYCG 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 3 cut(s) 64, 449, 1053
BslFI GGGAC 8 cut(s) 89, 587, 638, 689, 701, 995, 1152, 1152
BslI CCNNNNNNNGG 5 cut(s) 39, 641, 712, 724, 1036
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 8 cut(s) 89, 587, 638, 689, 701, 995, 1152, 1152
BsnI GGCC 5 cut(s) 43, 266, 294, 1029, 1052
BsoBI CYCGRG 1 cut(s) 448
Bsp1286I GDGCHC 3 cut(s) 164, 207, 382
Bsp143I GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
Bsp19I CCATGG 2 cut(s) 648, 711
BspACI CCGC 5 cut(s) 79, 336, 800, 1070, 1086
BspANI GGCC 5 cut(s) 43, 266, 294, 1029, 1052
BspCNI CTCAG 5 cut(s) 58, 176, 193, 430, 739
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 7 cut(s) 42, 646, 654, 705, 717, 789, 1068
BspPI GGATC 3 cut(s) 294, 460, 1005
BspT107I GGYRCC 1 cut(s) 787
BsrI ACTGG 4 cut(s) 543, 839, 944, 1040
BssECI CCNNGG 8 cut(s) 15, 64, 225, 448, 468, 648, 699, 711
BssMI GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
BssT1I CCWWGG 3 cut(s) 468, 648, 711
Bst2UI CCWGG 1 cut(s) 879
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 207, 264, 464
BstDEI CTNAG 6 cut(s) 45, 163, 201, 417, 747, 885
BstDSI CCRYGG 4 cut(s) 225, 648, 699, 711
BstENI CCTNNNNNAGG 1 cut(s) 639
BstF5I GGATG 1 cut(s) 938
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 2 cut(s) 211, 580
BstKTI GATC 7 cut(s) 242, 273, 289, 455, 991, 1000, 1095
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
BstMCI CGRYCG 1 cut(s) 991
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 2 cut(s) 406, 466
BstSCI CCNGG 4 cut(s) 63, 447, 448, 877
BstUI CGCG 1 cut(s) 209
BstV2I GAAGAC 2 cut(s) 127, 1125
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 5 cut(s) 43, 266, 294, 1029, 1052
BtgI CCRYGG 4 cut(s) 225, 648, 699, 711
BtsCI GGATG 1 cut(s) 938
BtsIMutI CAGTG 1 cut(s) 951
Cac8I GCNNGC 3 cut(s) 207, 264, 464
CfoI GCGC 2 cut(s) 211, 580
Cfr13I GGNCC 5 cut(s) 41, 489, 652, 703, 715
Cfr9I CCCGGG 1 cut(s) 448
Csp6I GTAC 4 cut(s) 774, 889, 968, 1114
CviAII CATG 5 cut(s) 403, 463, 649, 712, 1105
CviQI GTAC 4 cut(s) 774, 889, 968, 1114
DdeI CTNAG 6 cut(s) 45, 163, 201, 417, 747, 885
DpnI GATC 7 cut(s) 241, 272, 288, 454, 990, 999, 1094
DpnII GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
DriI GACNNNNNGTC 1 cut(s) 1145
EaeI YGGCCR 2 cut(s) 264, 1050
Eam1104I CTCTTC 1 cut(s) 189
Eam1105I GACNNNNNGTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 1059
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 3 cut(s) 468, 648, 711
Eco24I GRGCYC 3 cut(s) 164, 207, 382
Eco47I GGWCC 4 cut(s) 489, 652, 703, 715
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 980
Eco81I CCTNAGG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 639
EcoO109I RGGNCCY 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 877
EcoT14I CCWWGG 3 cut(s) 468, 648, 711
EcoT38I GRGCYC 3 cut(s) 164, 207, 382
ErhI CCWWGG 3 cut(s) 468, 648, 711
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 5 cut(s) 406, 466, 652, 715, 1108
FaqI GGGAC 8 cut(s) 89, 587, 638, 689, 701, 995, 1152, 1152
FatI CATG 5 cut(s) 402, 462, 648, 711, 1104
FauI CCCGC 1 cut(s) 1093
FauNDI CATATG 1 cut(s) 56
FokI GGATG 1 cut(s) 945
FriOI GRGCYC 3 cut(s) 164, 207, 382
FspBI CTAG 2 cut(s) 212, 927
GlaI GCGC 2 cut(s) 210, 579
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 5 cut(s) 43, 266, 294, 1029, 1052
HapII CCGG 3 cut(s) 64, 449, 1053
HhaI GCGC 2 cut(s) 211, 580
Hin1II CATG 5 cut(s) 406, 466, 652, 715, 1108
Hin6I GCGC 2 cut(s) 209, 578
HinP1I GCGC 2 cut(s) 209, 578
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 9 cut(s) 197, 307, 440, 526, 631, 682, 868, 949, 1140
HpaII CCGG 3 cut(s) 64, 449, 1053
HphI GGTGA 1 cut(s) 1093
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 4 cut(s) 166, 202, 420, 748
Hpy188III TCNNGA 4 cut(s) 350, 383, 523, 686
Hpy8I GTNNAC 1 cut(s) 832
Hpy99I CGWCG 3 cut(s) 820, 989, 1148
HpyAV CCTTC 6 cut(s) 342, 347, 421, 683, 717, 955
HpyCH4IV ACGT 4 cut(s) 132, 583, 818, 1165
HpyCH4V TGCA 3 cut(s) 659, 722, 1160
HpyF3I CTNAG 6 cut(s) 45, 163, 201, 417, 747, 885
HpySE526I ACGT 4 cut(s) 132, 583, 818, 1165
Hsp92II CATG 5 cut(s) 406, 466, 652, 715, 1108
HspAI GCGC 2 cut(s) 209, 578
Kzo9I GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
LmnI GCTCC 3 cut(s) 68, 881, 937
MaeI CTAG 2 cut(s) 212, 927
MaeII ACGT 4 cut(s) 132, 583, 818, 1165
MalI GATC 7 cut(s) 241, 272, 288, 454, 990, 999, 1094
MboI GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
MboII GAAGA 6 cut(s) 3, 127, 206, 307, 570, 1130
MhlI GDGCHC 3 cut(s) 164, 207, 382
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 8 cut(s) 344, 359, 370, 533, 587, 804, 810, 911
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 4 cut(s) 206, 449, 691, 1134
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 327, 840
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 3 cut(s) 64, 449, 1053
MspR9I CCNGG 4 cut(s) 65, 449, 450, 879
MvaI CCWGG 1 cut(s) 879
MvnI CGCG 1 cut(s) 209
NciI CCSGG 3 cut(s) 65, 449, 450
NcoI CCATGG 2 cut(s) 648, 711
NdeI CATATG 1 cut(s) 56
NdeII GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
NlaIII CATG 5 cut(s) 406, 466, 652, 715, 1108
NlaIV GGNNCC 7 cut(s) 42, 646, 654, 705, 717, 789, 1068
NspI RCATGY 2 cut(s) 406, 466
PaeI GCATGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 3 cut(s) 394, 981, 997
PfeI GAWTC 5 cut(s) 307, 526, 631, 868, 949
Ple19I CGATCG 1 cut(s) 991
PleI GAGTC 4 cut(s) 205, 448, 690, 1134
PpsI GAGTC 4 cut(s) 205, 448, 690, 1134
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 877
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 7 cut(s) 42, 646, 654, 705, 717, 789, 1068
PspPI GGNCC 5 cut(s) 41, 489, 652, 703, 715
PsrI GAACNNNNNNTAC 2 cut(s) 844, 876
PvuI CGATCG 1 cut(s) 991
RsaI GTAC 4 cut(s) 775, 890, 969, 1115
RsaNI GTAC 4 cut(s) 774, 889, 968, 1114
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 327, 840
Sau3AI GATC 7 cut(s) 239, 270, 286, 452, 988, 997, 1092
Sau96I GGNCC 5 cut(s) 41, 489, 652, 703, 715
SchI GAGTC 4 cut(s) 206, 449, 691, 1134
ScrFI CCNGG 4 cut(s) 65, 449, 450, 879
SduI GDGCHC 3 cut(s) 164, 207, 382
SinI GGWCC 4 cut(s) 489, 652, 703, 715
SmaI CCCGGG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 112, 636
SmoI CTYRAG 2 cut(s) 112, 636
SphI GCATGC 1 cut(s) 466
Sse9I AATT 8 cut(s) 344, 359, 370, 533, 587, 804, 810, 911
SsiI CCGC 5 cut(s) 79, 336, 800, 1070, 1086
SspMI CTAG 2 cut(s) 212, 927
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 4 cut(s) 63, 447, 448, 877
StyI CCWWGG 3 cut(s) 468, 648, 711
TaiI ACGT 4 cut(s) 135, 586, 821, 1168
TaqI TCGA 2 cut(s) 397, 1000
TaqII GACCGA 1 cut(s) 506
TasI AATT 8 cut(s) 344, 359, 370, 533, 587, 804, 810, 911
TfiI GAWTC 5 cut(s) 307, 526, 631, 868, 949
Tru1I TTAA 2 cut(s) 327, 840
Tru9I TTAA 2 cut(s) 327, 840
TscAI CASTG 1 cut(s) 951
TspDTI ATGAA 5 cut(s) 43, 79, 127, 493, 582
TspGWI ACGGA 3 cut(s) 214, 688, 878
TspMI CCCGGG 1 cut(s) 448
TspRI CASTG 1 cut(s) 951
VpaK11BI GGWCC 4 cut(s) 489, 652, 703, 715
XagI CCTNNNNNAGG 1 cut(s) 639
XapI RAATTY 2 cut(s) 344, 359
XceI RCATGY 2 cut(s) 406, 466
XmaI CCCGGG 1 cut(s) 448
XspI CTAG 2 cut(s) 212, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.