AT1G20430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016612
Physical Location & Seq
Reverse (-)
7083012 .. 7083910
899 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20430.1

Sequence Viewer

Length: 351 bp
ATGGCTTCGTCTGCGCCACAGGGATCTGTTGATCCTCTCACCGGGAAAGATCCGGCGAAGGCTTTAACCGCTGTTGCTTCTGGATTCTTCGAGAATGTGAAGAAAAACAAGCAAAGCTTCTTCCAGTTCGCCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATCGGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGAACAAGATAGTTTGACGGATCGTATGAGTAAAATCAAAAGCGATCTTCTTCATCAAGCATCGATTGACTCTTCCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGTGAAGATAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.77

Weight (kDa)

9.26

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AciI CCGC 2 cut(s) 69, 132
AclWI GGATC 4 cut(s) 26, 31, 44, 252
AcsI RAATTY 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 41, 141
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 4 cut(s) 26, 31, 44, 252
ApoI RAATTY 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 31, 347
BbsI GAAGAC 1 cut(s) 210
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 323
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 141
Bse1I ACTGG 2 cut(s) 124, 145
BseCI ATCGAT 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 41, 141
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 124, 145
Bsh1285I CGRYCG 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 167
BsiSI CCGG 3 cut(s) 42, 53, 300
BslI CCNNNNNNNGG 2 cut(s) 41, 141
BsmAI GTCTC 1 cut(s) 323
BsmBI CGTCTC 1 cut(s) 323
Bsp143I GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
BspACI CCGC 2 cut(s) 69, 132
BspCNI CTCAG 1 cut(s) 147
BspDI ATCGAT 1 cut(s) 287
BspPI GGATC 4 cut(s) 26, 31, 44, 252
BsrI ACTGG 2 cut(s) 124, 145
BssMI GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
BssNI GRCGYC 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 7 cut(s) 26, 34, 52, 167, 196, 247, 271
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 11, 68
BstSCI CCNGG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 23, 49
BstYI RGATCY 2 cut(s) 23, 49
Bsu15I ATCGAT 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 287
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 5, 62, 117
CviKI_1 RGCY 3 cut(s) 5, 62, 117
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 155
DpnI GATC 7 cut(s) 25, 33, 51, 166, 195, 246, 270
DpnII GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 137, 251
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 3 cut(s) 42, 53, 300
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 2 cut(s) 84, 293
HpaII CCGG 3 cut(s) 42, 53, 300
HphI GGTGA 2 cut(s) 31, 347
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 156, 164, 177
Hpy188III TCNNGA 5 cut(s) 81, 91, 191, 197, 220
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 52, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 68
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
LpnPI CCDG 8 cut(s) 5, 55, 66, 66, 126, 137, 182, 313
LweI GCATC 1 cut(s) 293
MalI GATC 7 cut(s) 25, 33, 51, 166, 195, 246, 270
MboI GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
MboII GAAGA 8 cut(s) 79, 112, 112, 215, 263, 266, 288, 350
MflI RGATCY 2 cut(s) 23, 49
MluCI AATT 1 cut(s) 186
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 2 cut(s) 45, 193
MseI TTAA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 42, 53, 300
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 11, 68
NciI CCSGG 1 cut(s) 43
NdeII GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
NlaIII CATG 1 cut(s) 139
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 133
Ple19I CGATCG 1 cut(s) 167
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PsuI RGATCY 2 cut(s) 23, 49
PvuI CGATCG 1 cut(s) 167
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 7 cut(s) 23, 31, 49, 164, 193, 244, 268
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 43
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 186
SsiI CCGC 2 cut(s) 69, 132
StyD4I CCNGG 1 cut(s) 41
TaqI TCGA 2 cut(s) 90, 287
TasI AATT 1 cut(s) 186
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 2 cut(s) 257, 311
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.