RchiOBHm_Chr6g0303941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016612
Physical Location & Seq
Reverse (-)
63458911 .. 63462030
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27305

Sequence Viewer

Length: 387 bp
ATGAATAAAAGGAGCCTTCTTCTCCAGTCTCCACTATCACTCTCGTTTCAGTTGCAAACTTCGAAGGTCATGGCGTCACCAGCACCGCCGAGCTCAGCCCCCGGCGCCCGGAAACCGTTGGGGTTTGTAGCAAACGCGGTGAAGCGCAAGGACAAATTCATCCAGTTCTTCGCAATGACCGGAATTTTGCTGCTAAGTGTCAGATCGCTCGGTCAAAAGTATCGCCTCCACGATCTTCAGGAGGACACGGCGGCTCTGAAAGAGGAGCAAGAGACCCTAGACAACCGAATGAACAACATCAAGAGAGACCTCCTTCACGAAGCCTCTGTTGAGCCCACTGGTCTCTTCGCCTCCAGGCTCCGCCGCCTCTTCGGCGACCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

10.15

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 1 cut(s) 137
AciI CCGC 5 cut(s) 86, 137, 251, 361, 364
AcsI RAATTY 2 cut(s) 155, 183
AcuI CTGAAG 1 cut(s) 221
AcyI GRCGYC 2 cut(s) 74, 105
AfiI CCNNNNNNNGG 1 cut(s) 108
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 4 cut(s) 33, 266, 300, 347
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 155, 183
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AspLEI GCGC 2 cut(s) 107, 147
AsuC2I CCSGG 2 cut(s) 102, 109
AsuHPI GGTGA 2 cut(s) 69, 151
AsuII TTCGAA 1 cut(s) 62
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 95, 336
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 355
BcnI CCSGG 2 cut(s) 102, 109
BcoDI GTCTC 4 cut(s) 33, 266, 300, 347
BfaI CTAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 372
BisI GCNGC 3 cut(s) 191, 252, 364
BlpI GCTNAGC 1 cut(s) 94
BlsI GCNGC 3 cut(s) 192, 253, 365
Bme1390I CCNGG 3 cut(s) 102, 109, 355
BmiI GGNNCC 3 cut(s) 14, 106, 359
BmrFI CCNGG 3 cut(s) 102, 109, 355
BpmI CTGGAG 2 cut(s) 8, 337
Bpu1102I GCTNAGC 1 cut(s) 94
Bpu14I TTCGAA 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 102, 109
BsaHI GRCGYC 2 cut(s) 74, 105
BsaI GGTCTC 3 cut(s) 266, 300, 347
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 3 cut(s) 25, 163, 343
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 3 cut(s) 25, 163, 343
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 3 cut(s) 102, 109, 180
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 4 cut(s) 33, 266, 300, 347
Bso31I GGTCTC 3 cut(s) 266, 300, 347
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 95, 336
Bsp143I GATC 2 cut(s) 203, 232
Bsp1720I GCTNAGC 1 cut(s) 94
BspACI CCGC 5 cut(s) 86, 137, 251, 361, 364
BspCNI CTCAG 1 cut(s) 107
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 3 cut(s) 14, 106, 359
BspT104I TTCGAA 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 3 cut(s) 266, 300, 347
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 3 cut(s) 25, 163, 343
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 203, 232
BssNI GRCGYC 2 cut(s) 74, 105
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 117, 384
Bst6I CTCTTC 2 cut(s) 350, 374
BstACI GRCGYC 2 cut(s) 74, 105
BstBI TTCGAA 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 94, 194
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 147
BstKTI GATC 2 cut(s) 206, 235
BstMAI GTCTC 4 cut(s) 33, 266, 300, 347
BstMBI GATC 2 cut(s) 203, 232
BstMWI GCNNNNNNNGC 3 cut(s) 80, 104, 372
BstNI CCWGG 1 cut(s) 355
BstSCI CCNGG 3 cut(s) 100, 107, 353
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 336
CfoI GCGC 2 cut(s) 107, 147
CseI GACGC 1 cut(s) 63
CviAII CATG 1 cut(s) 70
CviJI RGCY 7 cut(s) 15, 93, 98, 254, 323, 334, 358
CviKI_1 RGCY 7 cut(s) 15, 93, 98, 254, 323, 334, 358
DdeI CTNAG 2 cut(s) 94, 194
DinI GGCGCC 1 cut(s) 106
DpnI GATC 2 cut(s) 205, 234
DpnII GATC 2 cut(s) 203, 232
Eam1104I CTCTTC 2 cut(s) 350, 374
EarI CTCTTC 2 cut(s) 350, 374
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 95, 336
Eco31I GGTCTC 3 cut(s) 266, 300, 347
Eco53kI GAGCTC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 353
EcoT38I GRGCYC 2 cut(s) 95, 336
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
FaeI CATG 1 cut(s) 73
FaiI YATR 1 cut(s) 71
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 191, 252, 364
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 2 cut(s) 95, 336
Fsp4HI GCNGC 3 cut(s) 191, 252, 364
FspBI CTAG 1 cut(s) 278
GlaI GCGC 2 cut(s) 106, 146
GluI GCNGC 3 cut(s) 191, 252, 364
GsuI CTGGAG 2 cut(s) 8, 337
HaeII RGCGCY 1 cut(s) 108
HapII CCGG 3 cut(s) 102, 109, 180
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 107, 147
Hin1I GRCGYC 2 cut(s) 74, 105
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 2 cut(s) 105, 145
HinP1I GCGC 2 cut(s) 105, 145
HpaII CCGG 3 cut(s) 102, 109, 180
HphI GGTGA 2 cut(s) 69, 151
Hpy188I TCNGA 2 cut(s) 203, 258
Hpy188III TCNNGA 3 cut(s) 239, 301, 317
HpyAV CCTTC 3 cut(s) 26, 58, 323
HpyCH4III ACNGT 2 cut(s) 117, 384
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 104, 372
HpyF3I CTNAG 2 cut(s) 94, 194
Hsp92I GRCGYC 2 cut(s) 74, 105
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 2 cut(s) 105, 145
KasI GGCGCC 1 cut(s) 104
Kzo9I GATC 2 cut(s) 203, 232
LmnI GCTCC 3 cut(s) 12, 265, 363
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 75
MalI GATC 2 cut(s) 205, 234
MboI GATC 2 cut(s) 203, 232
MboII GAAGA 5 cut(s) 11, 160, 227, 337, 361
MhlI GDGCHC 2 cut(s) 95, 336
MluCI AATT 2 cut(s) 155, 183
Mly113I GGCGCC 1 cut(s) 105
MnlI CCTC 7 cut(s) 235, 236, 256, 320, 334, 361, 377
MspI CCGG 3 cut(s) 102, 109, 180
MspR9I CCNGG 3 cut(s) 102, 109, 355
MvaI CCWGG 1 cut(s) 355
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 80, 104, 372
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 2 cut(s) 102, 109
NdeII GATC 2 cut(s) 203, 232
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 3 cut(s) 14, 106, 359
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 75
NspV TTCGAA 1 cut(s) 62
PkrI GCNGC 3 cut(s) 192, 253, 365
PluTI GGCGCC 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 14, 106, 359
SacI GAGCTC 1 cut(s) 95
SatI GCNGC 3 cut(s) 191, 252, 364
Sau3AI GATC 2 cut(s) 203, 232
ScrFI CCNGG 3 cut(s) 102, 109, 355
SduI GDGCHC 2 cut(s) 95, 336
SetI ASST 3 cut(s) 69, 95, 312
SfoI GGCGCC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 62
Sse9I AATT 2 cut(s) 155, 183
SsiI CCGC 5 cut(s) 86, 137, 251, 361, 364
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 3 cut(s) 100, 107, 353
TaaI ACNGT 2 cut(s) 117, 384
TaqI TCGA 1 cut(s) 62
TaqII GACCGA 1 cut(s) 200
TasI AATT 2 cut(s) 155, 183
TauI GCSGC 2 cut(s) 254, 366
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 3 cut(s) 17, 148, 305
TspRI CASTG 1 cut(s) 343
XapI RAATTY 2 cut(s) 155, 183
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.