MD11G1257900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016612
Physical Location & Seq
Reverse (-)
37039048 .. 37039374
327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1257900.v1.1.491

Sequence Viewer

Length: 327 bp
ATGGCTTCATCAGCATCGCCAAGTTCTTCCGTGAGCGTCCAGAACTCAAAGAAATTGTTGGGGTTCATAGCAAATGCTGTGAAGCGCAAGGACAGCTTCATCCAGTTCTTTGCAATGACTAGAATTCTGCTATTGAGCGTCAGATCGTTGGGCCAGAAGTACCGCCTCCACGATCTTCAGGAAGACACGACGACTTTTAAAGAAGAGCCGGAAGCCCTAGCCGATCGCACGAAGAACATCAAGCGGGACCTCCTCCACGAGGCCTCTCTCGAGCCCTCTGGTCTCTTCGCTTCTAGGTTTCGCCTTCTCTTAGGCGAACGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.19

Weight (kDa)

9.69

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 163, 244
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 151, 261
ApoI RAATTY 1 cut(s) 123
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 151, 247
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 276
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 3 cut(s) 120, 218, 294
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 151, 247
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 120
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 153, 263
BsiEI CGRYCG 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 153, 263
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 143, 172, 223
BspACI CCGC 2 cut(s) 163, 244
BspANI GGCC 2 cut(s) 153, 263
BspLI GGNNCC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 103
BssMI GATC 3 cut(s) 143, 172, 223
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
Bst6I CTCTTC 2 cut(s) 198, 290
BstDEI CTNAG 1 cut(s) 310
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 3 cut(s) 146, 175, 226
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 143, 172, 223
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 11, 93
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 153, 263
BtsCI GGATG 1 cut(s) 99
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 151, 247
CseI GACGC 2 cut(s) 25, 127
Csp6I GTAC 1 cut(s) 160
CviJI RGCY 8 cut(s) 5, 96, 153, 208, 215, 221, 263, 274
CviKI_1 RGCY 8 cut(s) 5, 96, 153, 208, 215, 221, 263, 274
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 310
DpnI GATC 3 cut(s) 145, 174, 225
DpnII GATC 3 cut(s) 143, 172, 223
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 198, 290
EarI CTCTTC 2 cut(s) 198, 290
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 276
FaiI YATR 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 260
FauI CCCGC 1 cut(s) 237
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 3 cut(s) 120, 218, 294
GlaI GCGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 153, 263
HapII CCGG 1 cut(s) 209
HgaI GACGC 2 cut(s) 25, 127
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HpaII CCGG 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 40, 179, 269
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 93
HpyF3I CTNAG 1 cut(s) 310
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 143, 172, 223
LguI GCTCTTC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 53, 116, 164, 167, 222, 264
LweI GCATC 1 cut(s) 23
MaeI CTAG 3 cut(s) 120, 218, 294
MalI GATC 3 cut(s) 145, 174, 225
MboI GATC 3 cut(s) 143, 172, 223
MboII GAAGA 6 cut(s) 18, 167, 194, 215, 244, 277
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 53, 123
MnlI CCTC 6 cut(s) 176, 253, 260, 263, 274, 286
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 11, 93
NdeII GATC 3 cut(s) 143, 172, 223
NlaIV GGNNCC 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 269
PceI AGGCCT 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 198
Ple19I CGATCG 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 151, 247
PspPPI RGGWCCY 1 cut(s) 247
PvuI CGATCG 1 cut(s) 226
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 3 cut(s) 143, 172, 223
Sau96I GGNCC 2 cut(s) 151, 247
SduI GDGCHC 1 cut(s) 276
SetI ASST 3 cut(s) 98, 252, 299
SfaNI GCATC 1 cut(s) 23
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 53, 123
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 2 cut(s) 163, 244
SspMI CTAG 3 cut(s) 120, 218, 294
StuI AGGCCT 1 cut(s) 263
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 53, 123
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 55, 88
TspGWI ACGGA 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 123
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 3 cut(s) 120, 218, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.