Rroxscaffold_7G00164240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016612
Physical Location & Seq
Forward (+)
6251758 .. 6252075
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164240.1

Sequence Viewer

Length: 318 bp
ATGGCGTCACCAGCACCGCCGAGCTCAGCCCCCGGCGCCCGGAAACCGTTGGGGTTTGTAGCAAACGCGGTGAAGCGCAAGGACAAATTCATCCAGTTCTTCGCAATGACCGGAATTTTGCTGCTAAGTGTCAGATCGCTTGGTCAAAAGTATCGCCTCCACGATCTTCAGGAGGACACGGCAGCTCTGAAAGAGGAGCAAGAAACCCTAGACAACCGAATGAACAACATCAAGAGAGACCTCCTCCACGAAGCCTCTATCGAACCCACTGGTCTCTTCGCCTCCAGGCTCCGCCGTCTCTTCGGCGACCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

9.77

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 17, 68, 292
AcsI RAATTY 2 cut(s) 86, 114
AcuI CTGAAG 1 cut(s) 152
AcyI GRCGYC 2 cut(s) 5, 36
AfiI CCNNNNNNNGG 1 cut(s) 39
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 24, 185
AluI AGCT 2 cut(s) 24, 185
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 231, 278, 302
ApeKI GCWGC 2 cut(s) 121, 182
ApoI RAATTY 2 cut(s) 86, 114
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspLEI GCGC 2 cut(s) 38, 78
AsuC2I CCSGG 2 cut(s) 33, 40
AsuHPI GGTGA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 108, 194
BceAI ACGGC 2 cut(s) 195, 279
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 2 cut(s) 33, 40
BcoDI GTCTC 3 cut(s) 231, 278, 302
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 2 cut(s) 122, 183
BlpI GCTNAGC 1 cut(s) 25
BlsI GCNGC 2 cut(s) 123, 184
Bme1390I CCNGG 3 cut(s) 33, 40, 286
BmiI GGNNCC 2 cut(s) 37, 290
BmrFI CCNGG 3 cut(s) 33, 40, 286
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 25
BpuMI CCSGG 2 cut(s) 33, 40
BsaHI GRCGYC 2 cut(s) 5, 36
BsaI GGTCTC 2 cut(s) 231, 278
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 94, 274
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 94, 274
BseRI GAGGAG 2 cut(s) 209, 233
BseXI GCAGC 2 cut(s) 108, 194
Bsh1236I CGCG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 3 cut(s) 33, 40, 111
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 3 cut(s) 231, 278, 302
BsmBI CGTCTC 1 cut(s) 302
Bso31I GGTCTC 2 cut(s) 231, 278
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 134, 163
Bsp1720I GCTNAGC 1 cut(s) 25
BspACI CCGC 3 cut(s) 17, 68, 292
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 37, 290
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 2 cut(s) 231, 278
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 94, 274
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 134, 163
BssNI GRCGYC 2 cut(s) 5, 36
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 48, 315
Bst6I CTCTTC 2 cut(s) 281, 305
BstACI GRCGYC 2 cut(s) 5, 36
BstDEI CTNAG 2 cut(s) 25, 125
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 78
BstKTI GATC 2 cut(s) 137, 166
BstMAI GTCTC 3 cut(s) 231, 278, 302
BstMBI GATC 2 cut(s) 134, 163
BstMWI GCNNNNNNNGC 2 cut(s) 11, 35
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 31, 38, 284
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 108, 194
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 267
CfoI GCGC 2 cut(s) 38, 78
CviJI RGCY 5 cut(s) 24, 29, 185, 254, 289
CviKI_1 RGCY 5 cut(s) 24, 29, 185, 254, 289
DdeI CTNAG 2 cut(s) 25, 125
DinI GGCGCC 1 cut(s) 37
DpnI GATC 2 cut(s) 136, 165
DpnII GATC 2 cut(s) 134, 163
Eam1104I CTCTTC 2 cut(s) 281, 305
EarI CTCTTC 2 cut(s) 281, 305
EciI GGCGGA 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 26
Eco31I GGTCTC 2 cut(s) 231, 278
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 122, 183
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 122, 183
FspBI CTAG 1 cut(s) 209
GlaI GCGC 2 cut(s) 37, 77
GluI GCNGC 2 cut(s) 122, 183
GsuI CTGGAG 1 cut(s) 268
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 3 cut(s) 33, 40, 111
HhaI GCGC 2 cut(s) 38, 78
Hin1I GRCGYC 2 cut(s) 5, 36
Hin6I GCGC 2 cut(s) 36, 76
HinP1I GCGC 2 cut(s) 36, 76
HpaII CCGG 3 cut(s) 33, 40, 111
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 134, 189
Hpy188III TCNNGA 2 cut(s) 170, 232
HpyCH4III ACNGT 2 cut(s) 48, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 35
HpyF3I CTNAG 2 cut(s) 25, 125
Hsp92I GRCGYC 2 cut(s) 5, 36
HspAI GCGC 2 cut(s) 36, 76
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 134, 163
LmnI GCTCC 2 cut(s) 196, 294
LpnPI CCDG 9 cut(s) 24, 46, 53, 107, 124, 155, 255, 271, 298
Lsp1109I GCAGC 2 cut(s) 108, 194
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 6
MalI GATC 2 cut(s) 136, 165
MboI GATC 2 cut(s) 134, 163
MboII GAAGA 4 cut(s) 91, 158, 268, 292
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 2 cut(s) 86, 114
Mly113I GGCGCC 1 cut(s) 36
MnlI CCTC 7 cut(s) 166, 167, 187, 251, 254, 265, 292
MspI CCGG 3 cut(s) 33, 40, 111
MspR9I CCNGG 3 cut(s) 33, 40, 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 11, 35
NarI GGCGCC 1 cut(s) 36
NciI CCSGG 2 cut(s) 33, 40
NdeII GATC 2 cut(s) 134, 163
NlaIV GGNNCC 2 cut(s) 37, 290
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 123, 184
PluTI GGCGCC 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 37, 290
SacI GAGCTC 1 cut(s) 26
SatI GCNGC 2 cut(s) 122, 183
Sau3AI GATC 2 cut(s) 134, 163
ScrFI CCNGG 3 cut(s) 33, 40, 286
SduI GDGCHC 1 cut(s) 26
SetI ASST 3 cut(s) 26, 187, 243
SfoI GGCGCC 1 cut(s) 37
Sse9I AATT 2 cut(s) 86, 114
SsiI CCGC 3 cut(s) 17, 68, 292
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 31, 38, 284
TaaI ACNGT 2 cut(s) 48, 315
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 86, 114
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 121, 182
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 79, 236
TspRI CASTG 1 cut(s) 274
XapI RAATTY 2 cut(s) 86, 114
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.