Prupe.1G357000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016612
Physical Location & Seq
Forward (+)
33062053 .. 33063762
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G357000.1

Sequence Viewer

Length: 321 bp
ATGGCATCATCGGCACCGCTAAGCTCAGCCGCCCAAAACCCAGCGAAGTCGTTGGGTTTTATTGCAACCGCTATGAAGCGGAAGGACAGCTACATTCAGTTCTTCGCAATGACTGGAATTTTGCTGCTGAGCGTCAGATCACTGGGCCAAAAGTATCGCCTCCACGATCTTCACGAGGACACCTCGGCTCTTAAGGAGGAGCAAGAAGCCCTTACCAACCGCATGAACAACATAAAGCGCGATCTCCTCCATGAGGCCTCTCTCGAGCCCACTGGTCTCTTCGCTTCTAGGCTTCGCCTTCTCTTTGGCGAACGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

9.15

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AccII CGCG 1 cut(s) 240
AciI CCGC 5 cut(s) 17, 30, 69, 79, 220
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 253
AflII CTTAAG 1 cut(s) 191
AluBI AGCT 2 cut(s) 24, 90
AluI AGCT 2 cut(s) 24, 90
Alw26I GTCTC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 145, 255
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 263
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 270
BarI GAAGNNNNNNTAC 2 cut(s) 74, 106
BauI CACGAG 1 cut(s) 173
BbvI GCAGC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 288
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 30, 125
BlpI GCTNAGC 3 cut(s) 20, 25, 128
BlsI GCNGC 2 cut(s) 31, 126
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu1102I GCTNAGC 3 cut(s) 20, 25, 128
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 3 cut(s) 118, 147, 277
Bse3DI GCAATG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 39, 119
BseNI ACTGG 3 cut(s) 118, 147, 277
BseRI GAGGAG 2 cut(s) 212, 236
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 147, 257
BshNI GGYRCC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 147, 257
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 137, 166, 241
Bsp1720I GCTNAGC 3 cut(s) 20, 25, 128
BspACI CCGC 5 cut(s) 17, 30, 69, 79, 220
BspANI GGCC 2 cut(s) 147, 257
BspCNI CTCAG 2 cut(s) 38, 120
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 3 cut(s) 118, 147, 277
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 137, 166, 241
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 20, 25, 128
BstENI CCTNNNNNAGG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 3 cut(s) 140, 169, 244
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 3 cut(s) 137, 166, 241
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 147, 257
BtsIMutI CAGTG 2 cut(s) 140, 270
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 121
CviAII CATG 2 cut(s) 223, 251
CviJI RGCY 9 cut(s) 24, 29, 90, 147, 188, 209, 257, 268, 292
CviKI_1 RGCY 9 cut(s) 24, 29, 90, 147, 188, 209, 257, 268, 292
DdeI CTNAG 3 cut(s) 20, 25, 128
DpnI GATC 3 cut(s) 139, 168, 243
DpnII GATC 3 cut(s) 137, 166, 241
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 2 cut(s) 226, 254
FaiI YATR 4 cut(s) 74, 224, 233, 252
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FatI CATG 2 cut(s) 222, 250
Fnu4HI GCNGC 2 cut(s) 30, 125
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 30, 125
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 30, 125
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 147, 257
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 226, 254
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 173, 263
HpyAV CCTTC 2 cut(s) 76, 308
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 20, 25, 128
Hsp92II CATG 2 cut(s) 226, 254
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 137, 166, 241
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 4 cut(s) 54, 99, 128, 258
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 288
MalI GATC 3 cut(s) 139, 168, 243
MboI GATC 3 cut(s) 137, 166, 241
MboII GAAGA 3 cut(s) 94, 161, 271
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 1 cut(s) 117
MnlI CCTC 7 cut(s) 169, 170, 190, 193, 247, 257, 268
MseI TTAA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 191
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 137, 166, 241
NlaIII CATG 2 cut(s) 226, 254
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 263
PceI AGGCCT 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PkrI GCNGC 2 cut(s) 31, 126
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 30, 125
Sau3AI GATC 3 cut(s) 137, 166, 241
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 270
SetI ASST 3 cut(s) 26, 92, 185
SfaNI GCATC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 191, 263
SmoI CTYRAG 2 cut(s) 191, 263
Sse9I AATT 1 cut(s) 117
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 5 cut(s) 17, 30, 69, 79, 220
SspMI CTAG 1 cut(s) 288
StuI AGGCCT 1 cut(s) 257
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 117
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 147, 277
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 89, 239
TspRI CASTG 2 cut(s) 147, 277
Vha464I CTTAAG 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.