Rh6AG440400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016612
Physical Location & Seq
Reverse (-)
62819587 .. 62822831
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG440400.1

Sequence Viewer

Length: 474 bp
ATGGAAATCTACAACAGAAACCTGTTAAAAAAAAAATGCTTAATTTGTCACAGACACCTATCACGTCCTGCTCACGTGATTGATGGTATGAATAAAAGGAGCCTTCTTCTCCAGTCTCCACTATCACTCTCGTTTCAGTTGCAAACTTCGAAGGTCATGGCGTCACCAGCACCGCCGAGCTCAGCCCCCGGCGCCCGGAAACCGTTGGGGTTTGTAGCAAACGCGGTGAAGCGCAAGGACAAATTCATCCAGTTCTTCGCAATGACCGGAATTTTGCTGCTAAGTGTCAGATCGCTCGGTCAAAAGTATCGCCTCCACGATCTTCAGGAGGACACGGCGGCTCTGAAAGAGGAGCAAGAGACCCTAGACAACCGAATGAACAACATCAAGAGAGACCTCCTTCACGAAGCCTCTGTTGAGCCCACTGGTCTCTTCGCCTCCAGGCTCCGCCGCCTCTTCGGCGACCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.81

Weight (kDa)

10.12

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20430
malus_domestica MD08G1004900.v1.1 MD11G1257900.v1.1
prunus_persica Prupe.1G357000_v2.0.a1
pyrus_communis pycom08g00380
rosa_chinensis RchiOBHm_Chr6g0303941
rosa_laevigata RLG00000011031
rosa_multiflora Rmu_sc0004644.1_g000012
rosa_roxburghii Rroxscaffold_7G00164240
rosa_samantha Rh6AG440400 Rh6BG462500 Rh6CG452700 Rh6DG439700
rosa_wichuraiana Rw6G038140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 224
AciI CCGC 5 cut(s) 173, 224, 338, 448, 451
AcsI RAATTY 2 cut(s) 242, 270
AcuI CTGAAG 1 cut(s) 308
AcvI CACGTG 1 cut(s) 76
AcyI GRCGYC 2 cut(s) 161, 192
AfiI CCNNNNNNNGG 1 cut(s) 195
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 4 cut(s) 120, 353, 387, 434
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 242, 270
ArsI GACNNNNNNTTYG 2 cut(s) 256, 288
AspLEI GCGC 2 cut(s) 194, 234
AsuC2I CCSGG 2 cut(s) 189, 196
AsuHPI GGTGA 2 cut(s) 156, 238
AsuII TTCGAA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 182, 423
BbrPI CACGTG 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 442
BcnI CCSGG 2 cut(s) 189, 196
BcoDI GTCTC 4 cut(s) 120, 353, 387, 434
BfaI CTAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 459
BisI GCNGC 3 cut(s) 278, 339, 451
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 3 cut(s) 279, 340, 452
Bme1390I CCNGG 3 cut(s) 189, 196, 442
BmgBI CACGTC 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 101, 193, 446
BmrFI CCNGG 3 cut(s) 189, 196, 442
BpmI CTGGAG 2 cut(s) 95, 424
Bpu1102I GCTNAGC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 189, 196
BsaAI YACGTR 1 cut(s) 76
BsaHI GRCGYC 2 cut(s) 161, 192
BsaI GGTCTC 3 cut(s) 353, 387, 434
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 3 cut(s) 112, 250, 430
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 3 cut(s) 112, 250, 430
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 3 cut(s) 189, 196, 267
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 4 cut(s) 120, 353, 387, 434
Bso31I GGTCTC 3 cut(s) 353, 387, 434
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 182, 423
Bsp143I GATC 2 cut(s) 290, 319
Bsp1720I GCTNAGC 1 cut(s) 181
BspACI CCGC 5 cut(s) 173, 224, 338, 448, 451
BspCNI CTCAG 1 cut(s) 194
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 3 cut(s) 101, 193, 446
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 3 cut(s) 353, 387, 434
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 3 cut(s) 112, 250, 430
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 290, 319
BssNI GRCGYC 2 cut(s) 161, 192
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 2 cut(s) 204, 471
Bst6I CTCTTC 2 cut(s) 437, 461
BstACI GRCGYC 2 cut(s) 161, 192
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 181, 281
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 234
BstKTI GATC 2 cut(s) 293, 322
BstMAI GTCTC 4 cut(s) 120, 353, 387, 434
BstMBI GATC 2 cut(s) 290, 319
BstMWI GCNNNNNNNGC 3 cut(s) 167, 191, 459
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 3 cut(s) 187, 194, 440
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 264
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 423
CfoI GCGC 2 cut(s) 194, 234
CseI GACGC 1 cut(s) 150
CviAII CATG 1 cut(s) 157
CviJI RGCY 7 cut(s) 102, 180, 185, 341, 410, 421, 445
CviKI_1 RGCY 7 cut(s) 102, 180, 185, 341, 410, 421, 445
DdeI CTNAG 2 cut(s) 181, 281
DinI GGCGCC 1 cut(s) 193
DpnI GATC 2 cut(s) 292, 321
DpnII GATC 2 cut(s) 290, 319
Eam1104I CTCTTC 2 cut(s) 437, 461
EarI CTCTTC 2 cut(s) 437, 461
EciI GGCGGA 1 cut(s) 437
Ecl136II GAGCTC 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 182, 423
Eco31I GGTCTC 3 cut(s) 353, 387, 434
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 308
Eco72I CACGTG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 440
EcoT38I GRGCYC 2 cut(s) 182, 423
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 89, 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 278, 339, 451
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 182, 423
Fsp4HI GCNGC 3 cut(s) 278, 339, 451
FspBI CTAG 1 cut(s) 365
GlaI GCGC 2 cut(s) 193, 233
GluI GCNGC 3 cut(s) 278, 339, 451
GsuI CTGGAG 2 cut(s) 95, 424
HaeII RGCGCY 1 cut(s) 195
HapII CCGG 3 cut(s) 189, 196, 267
HgaI GACGC 1 cut(s) 150
HhaI GCGC 2 cut(s) 194, 234
Hin1I GRCGYC 2 cut(s) 161, 192
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 192, 232
HinP1I GCGC 2 cut(s) 192, 232
HpaII CCGG 3 cut(s) 189, 196, 267
HphI GGTGA 2 cut(s) 156, 238
Hpy188I TCNGA 2 cut(s) 290, 345
Hpy188III TCNNGA 3 cut(s) 326, 388, 404
HpyAV CCTTC 3 cut(s) 113, 145, 410
HpyCH4III ACNGT 2 cut(s) 204, 471
HpyCH4IV ACGT 2 cut(s) 64, 75
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 191, 459
HpyF3I CTNAG 2 cut(s) 181, 281
HpySE526I ACGT 2 cut(s) 64, 75
Hsp92I GRCGYC 2 cut(s) 161, 192
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 192, 232
KasI GGCGCC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 290, 319
LmnI GCTCC 3 cut(s) 99, 352, 450
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 1 cut(s) 365
MaeII ACGT 2 cut(s) 64, 75
MaeIII GTNAC 2 cut(s) 47, 162
MalI GATC 2 cut(s) 292, 321
MboI GATC 2 cut(s) 290, 319
MboII GAAGA 5 cut(s) 98, 247, 314, 424, 448
MhlI GDGCHC 2 cut(s) 182, 423
MluCI AATT 3 cut(s) 42, 242, 270
Mly113I GGCGCC 1 cut(s) 192
MnlI CCTC 7 cut(s) 322, 323, 343, 407, 421, 448, 464
MseI TTAA 2 cut(s) 26, 41
MspI CCGG 3 cut(s) 189, 196, 267
MspR9I CCNGG 3 cut(s) 189, 196, 442
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 167, 191, 459
NarI GGCGCC 1 cut(s) 192
NciI CCSGG 2 cut(s) 189, 196
NdeII GATC 2 cut(s) 290, 319
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 101, 193, 446
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 47, 162
NspV TTCGAA 1 cut(s) 149
PkrI GCNGC 3 cut(s) 279, 340, 452
PluTI GGCGCC 1 cut(s) 195
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 440
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 3 cut(s) 101, 193, 446
SacI GAGCTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 26, 41
SatI GCNGC 3 cut(s) 278, 339, 451
Sau3AI GATC 2 cut(s) 290, 319
ScrFI CCNGG 3 cut(s) 189, 196, 442
SduI GDGCHC 2 cut(s) 182, 423
SetI ASST 7 cut(s) 24, 60, 67, 78, 156, 182, 399
SfoI GGCGCC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 149
Sse9I AATT 3 cut(s) 42, 242, 270
SsiI CCGC 5 cut(s) 173, 224, 338, 448, 451
SspDI GGCGCC 1 cut(s) 191
SspMI CTAG 1 cut(s) 365
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 187, 194, 440
TaaI ACNGT 2 cut(s) 204, 471
TaiI ACGT 2 cut(s) 67, 78
TaqI TCGA 1 cut(s) 149
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 42, 242, 270
TauI GCSGC 2 cut(s) 341, 453
Tru1I TTAA 2 cut(s) 26, 41
Tru9I TTAA 2 cut(s) 26, 41
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 47, 162
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 2 cut(s) 47, 162
TspDTI ATGAA 3 cut(s) 104, 235, 392
TspRI CASTG 1 cut(s) 430
XapI RAATTY 2 cut(s) 242, 270
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.