Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014192

Physical Location & Seq

Genomic Coordinates Forward (+)

7678208 .. 7679843

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGGAAGGAAGTCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCATTATCAGTTTCATGTGTTCATTTCATATGTTCGTCGATTGGAGCATACATTGTGATTAAAGTCTTAAAGCTTAAACCTTTGATTGTGGTTGATCCAGAAGATAGGTGGAGGAGGATTTTTCCAATGTCATTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGTTGTGTTACAGTGGTTGGTATGGAGGAAATATTTTGATTGGCGTATTTGGGCGTCATTGGTGCCTATTGTTGGAGGGATTCTTCTTACTTCTATTACAGAACTTAGCTTTAATGTGTTTGGATTCTGTGCTGCTTTGTTTGGATGTTTAGCTACCTCTACAAAGACCATTCTTGCAGAATCTCTTCTTCATGGATACAAATTTGACAGCATAAACACGGTATACTATATGGCGCCTTTCGCGACCATGATTCTCGGGTTACCTGCATTTTTACTAGAAAGGAATGGAATTTTGGATTGGTTTGAAGCACATCCATCTCCATGGTCGGCTCTCATAATTCTTTTCAACTCAGGTGTTCTAGCTTTCTGTCTTAACTTCTCCATCTTCTATGTCATTCAATCCACAACAGCAGTCACATTCAATGTAGCTGGAAACCTTAAGGTTGCAGTAGCTGTGTTTGTTTCATGGATGATATTTCGAAACCCGATATCACCGATGAATGCTGTTGGCTGCGGAATCACACTTGTGGGCTGCACCTTTTACGGATATGTAAGACACATGCTTTCTCAGCAACAACCCGGAACTCCTAGGACTCCTCGTACCCCAAGGAACAAGATGGAACTGATCCCTCTTGTTAATGATAAACTCGAGAGTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0022857 GO:0034220 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

341

Amino Acids

38.85

Weight (kDa)

9.45

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	17 - 302	3.6e-50	Triose-phosphate Transporter family
UAA	PF08449	17 - 304	4.6e-14	UAA transporter family
EamA	PF00892	31 - 152	2.5e-09	EamA-like transporter family
EamA	PF00892	161 - 301	2.8e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21870 AT1G77610
fragaria_vesca	FvH4_2g26800 FvH4_2g26800
malus_domestica	MD08G1164800.v1.1 MD15G1350800.v1.1
prunus_persica	Prupe.1G499700_v2.0.a1
pyrus_communis	pycom12654g00030 pycom15g31330
rosa_chinensis	RchiOBHm_Chr6g0295661
rosa_laevigata	RLG00000011778
rosa_multiflora	Rmu_sc0006802.1_g000008 Rmu_sc0015254.1_g000002
rosa_rugosa	Rorug06G0253200
rosa_samantha	Rh6CG380700 Rh6DG367600
rosa_wichuraiana	Rw6G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	2 cut(s)	424, 595
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	1 cut(s)	605
AciI	CCGC	1 cut(s)	876
AclI	AACGTT	1 cut(s)	78
AclWI	GGATC	3 cut(s)	113, 221, 982
AcsI	RAATTY	3 cut(s)	563, 651, 1020
AcyI	GRCGYC	3 cut(s)	22, 416, 596
AfaI	GTAC	1 cut(s)	964
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	6 cut(s)	62, 127, 668, 709, 761, 784
AjuI	GAANNNNNNNTTGG	4 cut(s)	638, 643, 670, 675
AleI	CACNNNNGTG	1 cut(s)	887
AluBI	AGCT	6 cut(s)	205, 471, 515, 725, 791, 815
AluI	AGCT	6 cut(s)	205, 471, 515, 725, 791, 815
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	113, 221, 982
AlwNI	CAGNNNCTG	2 cut(s)	118, 815
Ama87I	CYCGRG	2 cut(s)	617, 1010
ApeKI	GCWGC	3 cut(s)	494, 873, 894
ApoI	RAATTY	3 cut(s)	563, 651, 1020
Asp700I	GAANNNNTTC	1 cut(s)	546
AspA2I	CCTAGG	1 cut(s)	950
AspLEI	GCGC	1 cut(s)	598
AsuC2I	CCSGG	1 cut(s)	942
AsuHPI	GGTGA	1 cut(s)	846
AsuII	TTCGAA	1 cut(s)	841
AvaI	CYCGRG	2 cut(s)	617, 1010
AvrII	CCTAGG	1 cut(s)	950
BanI	GGYRCC	2 cut(s)	424, 595
BbvI	GCAGC	3 cut(s)	481, 860, 881
BccI	CCATC	3 cut(s)	685, 752, 973
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	942
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	3 cut(s)	638, 722, 951
BfoI	RGCGCY	1 cut(s)	599
BfrI	CTTAAG	1 cut(s)	800
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	3 cut(s)	495, 874, 895
BlnI	CCTAGG	1 cut(s)	950
BlsI	GCNGC	3 cut(s)	496, 875, 896
Bme1390I	CCNGG	1 cut(s)	942
BmeT110I	CYCGRG	2 cut(s)	617, 1010
BmiI	GGNNCC	2 cut(s)	426, 597
BmrFI	CCNGG	1 cut(s)	942
Bpu14I	TTCGAA	1 cut(s)	841
BpuMI	CCSGG	1 cut(s)	942
Bsa29I	ATCGAT	1 cut(s)	53
BsaHI	GRCGYC	3 cut(s)	22, 416, 596
BsaJI	CCNNGG	3 cut(s)	683, 950, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	683, 950, 968
BseGI	GGATG	3 cut(s)	512, 673, 837
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	726, 944
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	259, 948
BseXI	GCAGC	3 cut(s)	481, 860, 881
BsgI	GTGCAG	1 cut(s)	880
Bsh1236I	CGCG	1 cut(s)	605
BshNI	GGYRCC	2 cut(s)	424, 595
BshVI	ATCGAT	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	617, 1010
BsiSI	CCGG	1 cut(s)	942
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	868
BsoBI	CYCGRG	2 cut(s)	617, 1010
Bsp119I	TTCGAA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	41, 105, 226, 987
Bsp19I	CCATGG	1 cut(s)	683
Bsp68I	TCGCGA	1 cut(s)	605
BspACI	CCGC	1 cut(s)	876
BspCNI	CTCAG	2 cut(s)	725, 943
BspDI	ATCGAT	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	605
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	426, 597
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	3 cut(s)	113, 221, 982
BspT104I	TTCGAA	1 cut(s)	841
BspT107I	GGYRCC	2 cut(s)	424, 595
BspTI	CTTAAG	1 cut(s)	800
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	683, 950, 968
BssMI	GATC	4 cut(s)	41, 105, 226, 987
BssNAI	GTATAC	1 cut(s)	586
BssNI	GRCGYC	3 cut(s)	22, 416, 596
BssT1I	CCWWGG	3 cut(s)	683, 950, 968
Bst1107I	GTATAC	1 cut(s)	586
Bst4CI	ACNGT	4 cut(s)	85, 364, 375, 583
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	3 cut(s)	22, 416, 596
BstAFI	CTTAAG	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	841
BstDEI	CTNAG	4 cut(s)	305, 467, 712, 930
BstDSI	CCRYGG	1 cut(s)	683
BstEII	GGTNACC	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	512, 673, 837
BstFNI	CGCG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	4 cut(s)	44, 108, 229, 990
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	41, 105, 226, 987
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 931
BstNSI	RCATGY	1 cut(s)	925
BstPI	GGTNACC	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	940
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	481, 860, 881
BstX2I	RGATCY	2 cut(s)	41, 105
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	2 cut(s)	41, 105
BstZ17I	GTATAC	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	683
BtsCI	GGATG	3 cut(s)	512, 673, 837
BtsIMutI	CAGTG	1 cut(s)	380
BtuMI	TCGCGA	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	634
CaiI	CAGNNNCTG	2 cut(s)	118, 815
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	1 cut(s)	598
ClaI	ATCGAT	1 cut(s)	53
CseI	GACGC	2 cut(s)	11, 405
Csp6I	GTAC	1 cut(s)	963
CviAII	CATG	7 cut(s)	94, 147, 554, 610, 684, 828, 922
CviJI	RGCY	9 cut(s)	205, 471, 515, 692, 725, 791, 815, 873, 894
CviKI_1	RGCY	9 cut(s)	205, 471, 515, 692, 725, 791, 815, 873, 894
CviQI	GTAC	1 cut(s)	963
DdeI	CTNAG	4 cut(s)	305, 467, 712, 930
DinI	GGCGCC	1 cut(s)	597
DpnI	GATC	4 cut(s)	43, 107, 228, 989
DpnII	GATC	4 cut(s)	41, 105, 226, 987
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	3 cut(s)	683, 950, 968
Eco32I	GATATC	1 cut(s)	852
Eco88I	CYCGRG	2 cut(s)	617, 1010
Eco91I	GGTNACC	1 cut(s)	621
EcoO65I	GGTNACC	1 cut(s)	621
EcoRV	GATATC	1 cut(s)	852
EcoT14I	CCWWGG	3 cut(s)	683, 950, 968
EgeI	GGCGCC	1 cut(s)	597
EheI	GGCGCC	1 cut(s)	597
ErhI	CCWWGG	3 cut(s)	683, 950, 968
FaeI	CATG	7 cut(s)	97, 150, 557, 613, 687, 831, 925
FatI	CATG	7 cut(s)	93, 146, 553, 609, 683, 827, 921
FauNDI	CATATG	1 cut(s)	161
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	3 cut(s)	495, 874, 895
FokI	GGATG	3 cut(s)	519, 660, 844
Fsp4HI	GCNGC	3 cut(s)	495, 874, 895
FspBI	CTAG	3 cut(s)	638, 722, 951
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	3 cut(s)	495, 874, 895
HaeII	RGCGCY	1 cut(s)	599
HapII	CCGG	1 cut(s)	942
HgaI	GACGC	2 cut(s)	11, 405
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	3 cut(s)	22, 416, 596
Hin1II	CATG	7 cut(s)	97, 150, 557, 613, 687, 831, 925
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	7 cut(s)	55, 442, 486, 542, 613, 879, 955
HpaII	CCGG	1 cut(s)	942
HphI	GGTGA	1 cut(s)	846
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	2 cut(s)	41, 114
Hpy188III	TCNNGA	4 cut(s)	94, 230, 604, 1012
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4III	ACNGT	4 cut(s)	85, 364, 375, 583
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	6 cut(s)	331, 356, 539, 629, 809, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 931
HpyF3I	CTNAG	4 cut(s)	305, 467, 712, 930
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	3 cut(s)	22, 416, 596
Hsp92II	CATG	7 cut(s)	97, 150, 557, 613, 687, 831, 925
HspAI	GCGC	1 cut(s)	596
KasI	GGCGCC	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	41, 105, 226, 987
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	8 cut(s)	104, 243, 330, 366, 639, 699, 777, 955
Lsp1109I	GCAGC	3 cut(s)	481, 860, 881
MaeI	CTAG	3 cut(s)	638, 722, 951
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	4 cut(s)	79, 369, 621, 775
MalI	GATC	4 cut(s)	43, 107, 228, 989
MboI	GATC	4 cut(s)	41, 105, 226, 987
MboII	GAAGA	6 cut(s)	50, 245, 437, 539, 542, 739
MflI	RGATCY	2 cut(s)	41, 105
MluCI	AATT	4 cut(s)	563, 651, 699, 1020
Mly113I	GGCGCC	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	949
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	237, 240, 381, 431, 529, 969, 1002
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	9 cut(s)	75, 192, 200, 207, 347, 474, 735, 801, 999
MslI	CAYNNNNRTG	2 cut(s)	682, 887
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	1 cut(s)	942
MspR9I	CCNGG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	868
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	602, 931
NarI	GGCGCC	1 cut(s)	596
NciI	CCSGG	1 cut(s)	942
NcoI	CCATGG	1 cut(s)	683
NdeI	CATATG	1 cut(s)	161
NdeII	GATC	4 cut(s)	41, 105, 226, 987
NlaIII	CATG	7 cut(s)	97, 150, 557, 613, 687, 831, 925
NlaIV	GGNNCC	2 cut(s)	426, 597
NmuCI	GTSAC	1 cut(s)	775
NruI	TCGCGA	1 cut(s)	605
NspI	RCATGY	1 cut(s)	925
NspV	TTCGAA	1 cut(s)	841
OliI	CACNNNNGTG	1 cut(s)	887
PaeR7I	CTCGAG	1 cut(s)	1010
PagI	TCATGA	1 cut(s)	93
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	6 cut(s)	55, 442, 486, 542, 613, 879
PkrI	GCNGC	3 cut(s)	496, 875, 896
PleI	GAGTC	1 cut(s)	949
PluTI	GGCGCC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	949
Psp1406I	AACGTT	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	621
PspN4I	GGNNCC	2 cut(s)	426, 597
PstNI	CAGNNNCTG	2 cut(s)	118, 815
PsuI	RGATCY	2 cut(s)	41, 105
RruI	TCGCGA	1 cut(s)	605
RsaI	GTAC	1 cut(s)	964
RsaNI	GTAC	1 cut(s)	963
RseI	CAYNNNNRTG	2 cut(s)	682, 887
SaqAI	TTAA	9 cut(s)	75, 192, 200, 207, 347, 474, 735, 801, 999
SatI	GCNGC	3 cut(s)	495, 874, 895
Sau3AI	GATC	4 cut(s)	41, 105, 226, 987
SchI	GAGTC	1 cut(s)	949
ScrFI	CCNGG	1 cut(s)	942
SfoI	GGCGCC	1 cut(s)	597
Sfr274I	CTCGAG	1 cut(s)	1010
SfuI	TTCGAA	1 cut(s)	841
SlaI	CTCGAG	1 cut(s)	1010
SmiMI	CAYNNNNRTG	2 cut(s)	682, 887
SmlI	CTYRAG	2 cut(s)	800, 1010
SmoI	CTYRAG	2 cut(s)	800, 1010
Sse9I	AATT	4 cut(s)	563, 651, 699, 1020
SsiI	CCGC	1 cut(s)	876
SspDI	GGCGCC	1 cut(s)	595
SspI	AATATT	2 cut(s)	298, 395
SspMI	CTAG	3 cut(s)	638, 722, 951
StyD4I	CCNGG	1 cut(s)	940
StyI	CCWWGG	3 cut(s)	683, 950, 968
TaaI	ACNGT	4 cut(s)	85, 364, 375, 583
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	4 cut(s)	53, 170, 841, 1011
TasI	AATT	4 cut(s)	563, 651, 699, 1020
TfiI	GAWTC	6 cut(s)	55, 442, 486, 542, 613, 879
Tru1I	TTAA	9 cut(s)	75, 192, 200, 207, 347, 474, 735, 801, 999
Tru9I	TTAA	9 cut(s)	75, 192, 200, 207, 347, 474, 735, 801, 999
TscAI	CASTG	1 cut(s)	380
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	3 cut(s)	494, 873, 894
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	7 cut(s)	110, 135, 143, 148, 542, 816, 875
TspGWI	ACGGA	1 cut(s)	921
TspRI	CASTG	1 cut(s)	380
Vha464I	CTTAAG	1 cut(s)	800
XapI	RAATTY	3 cut(s)	563, 651, 1020
XceI	RCATGY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	1010
XmaJI	CCTAGG	1 cut(s)	950
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	3 cut(s)	638, 722, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.