Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014192

Physical Location & Seq

Genomic Coordinates Reverse (-)

21450504 .. 21455941

Gene Structure 5438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGGAGACTCGGCTGTGCCAGTGGAGCGTCATTAGATCTCTTCTAGCTGTTCTTCAATGGTGGGTTTTCAATGTCACCGTCGTTGTCATGAACAAGTGGATCTTTCAGAAACTGGATTTTAAGTTTCCCTTGACTGTATCATGTGTGCATTTCATATGCTCAGCAATTGGGGCATACACGGTAATCAAGGTGTTGAGGCTTAAACCACTAATAGCAGTTGAGCCTGAAGATCGCTGGAAAAGGATATTTCCCATGTCATTCGTGTTCTGTATTAACATAGTGTTGGGGAATGTGAGCTTACGTTACATTCCAGTTTCTTTCATGCAGACGATAAAGTCATTCACTCCCGCGACCACAGTTTTTTTGCAGTGGCTGGTTTGGAGAAAGAGCTTTGACTGGCGAATTTGGGCTTCCTTGATACCCATTGTTGGAGGAATTCTTCTTACTTCAGTTACAGAGCTTAGTTTCAATATGCTTGGATTTTGTGCTGCCTTATTTGGTTGTCTGGCTACTTCCACGAAAACCATCCTTGCAGAGTCTCTGTTGCACGGATACAAGTTTGACAGCATAAACACTGTCTACTACATGGCACCTTTCGCAACCATGATCTTGGGAGTACCTGCTGCGCTACTCGAAGGTAATGGAGTTATTGAATGGCTTCACACGCATGAGACTCTTGTTCCATCACTCACCATAATTTTCAGCTCTGGGGTACTGGCATTTTGTCTCAACTTCTCCATCTTCTATGTGATTCATTCCACAACTGCTGTAACATTCAATGTTGCTGGAAACCTCAAGGTTGCTGTTGCTGTCCTTGTTTCATGGATGATATTCAAAAACCCAATTTCTGGTATGAATGCCGTTGGATGTGGAGTAACCCTCGTGGGATGCACTTTCTATGGGTACATAAGGCATCTCCTCTCCCAACAGCTGCCCGGAACTCCTCGAGCTTCCAAGACTCCACCCAGGACTCCACGAGGTCGTATGGAGCTGCAGCCCCTTGTAAATGATAAGTTAGATGACAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0022857 GO:0034220 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

345

Amino Acids

38.61

Weight (kDa)

9.31

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	14 - 301	9.9e-14	UAA transporter family
TPT	PF03151	15 - 301	1.7e-49	Triose-phosphate Transporter family
EamA	PF00892	27 - 151	9.5e-09	EamA-like transporter family
EamA	PF00892	160 - 300	2.2e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21870 AT1G77610
fragaria_vesca	FvH4_2g26800 FvH4_2g26800
malus_domestica	MD08G1164800.v1.1 MD15G1350800.v1.1
prunus_persica	Prupe.1G499700_v2.0.a1
pyrus_communis	pycom12654g00030 pycom15g31330
rosa_chinensis	RchiOBHm_Chr6g0295661
rosa_laevigata	RLG00000011778
rosa_multiflora	Rmu_sc0006802.1_g000008 Rmu_sc0015254.1_g000002
rosa_rugosa	Rorug06G0253200
rosa_samantha	Rh6CG380700 Rh6DG367600
rosa_wichuraiana	Rw6G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	1 cut(s)	353
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	405, 438
AcuI	CTGAAG	2 cut(s)	249, 435
AfaI	GTAC	3 cut(s)	621, 717, 908
AfiI	CCNNNNNNNGG	2 cut(s)	431, 851
AgsI	TTSAA	6 cut(s)	59, 73, 472, 656, 781, 838
AjnI	CCWGG	1 cut(s)	968
AluBI	AGCT	8 cut(s)	50, 300, 393, 463, 708, 934, 953, 994
AluI	AGCT	8 cut(s)	50, 300, 393, 463, 708, 934, 953, 994
Alw26I	GTCTC	4 cut(s)	2, 546, 668, 734
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	2 cut(s)	115, 376
Ama87I	CYCGRG	1 cut(s)	948
ApeKI	GCWGC	5 cut(s)	491, 626, 934, 994, 997
ApoI	RAATTY	2 cut(s)	405, 438
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	939
AsuHPI	GGTGA	2 cut(s)	70, 685
AvaI	CYCGRG	1 cut(s)	948
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	2 cut(s)	884, 978
BbvI	GCAGC	5 cut(s)	478, 613, 921, 981, 1009
BccI	CCATC	3 cut(s)	536, 694, 749
BceAI	ACGGC	1 cut(s)	848
BciT130I	CCWGG	1 cut(s)	970
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	939
BcoDI	GTCTC	4 cut(s)	2, 546, 668, 734
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	995
BfuAI	ACCTGC	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	5 cut(s)	492, 627, 935, 995, 998
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	5 cut(s)	493, 628, 936, 996, 999
Bme1390I	CCNGG	2 cut(s)	939, 970
BmeT110I	CYCGRG	1 cut(s)	948
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	2 cut(s)	939, 970
BmsI	GCATC	2 cut(s)	881, 925
BplI	GAGNNNNNCTC	2 cut(s)	867, 899
Bpu1102I	GCTNAGC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	939
BsaJI	CCNNGG	1 cut(s)	968
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 851
Bse1I	ACTGG	5 cut(s)	22, 120, 314, 404, 723
BseBI	CCWGG	1 cut(s)	970
BseDI	CCNNGG	1 cut(s)	968
BseGI	GGATG	4 cut(s)	528, 834, 875, 896
BseLI	CCNNNNNNNGG	2 cut(s)	431, 851
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	5 cut(s)	22, 120, 314, 404, 723
BseRI	GAGGAG	3 cut(s)	20, 911, 936
BseXI	GCAGC	5 cut(s)	478, 613, 921, 981, 1009
Bsh1236I	CGCG	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	948
BsiSI	CCGG	1 cut(s)	939
BslI	CCNNNNNNNGG	2 cut(s)	431, 851
BsmAI	GTCTC	4 cut(s)	2, 546, 668, 734
BsmI	GAATGC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	948
Bsp143I	GATC	4 cut(s)	38, 102, 232, 609
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	1 cut(s)	999
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	592
BsrI	ACTGG	5 cut(s)	22, 120, 314, 404, 723
BssECI	CCNNGG	1 cut(s)	968
BssMI	GATC	4 cut(s)	38, 102, 232, 609
BssSI	CACGAG	2 cut(s)	884, 978
Bst2BI	CACGAG	2 cut(s)	884, 978
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	5 cut(s)	82, 139, 184, 361, 580
Bst6I	CTCTTC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	163, 464
BstF5I	GGATG	4 cut(s)	528, 834, 875, 896
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	4 cut(s)	41, 105, 235, 612
BstMAI	GTCTC	4 cut(s)	2, 546, 668, 734
BstMBI	GATC	4 cut(s)	38, 102, 232, 609
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 173, 599, 667
BstNI	CCWGG	1 cut(s)	970
BstSCI	CCNGG	2 cut(s)	937, 968
BstSFI	CTRYAG	1 cut(s)	995
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	5 cut(s)	478, 613, 921, 981, 1009
BstX2I	RGATCY	2 cut(s)	38, 102
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	38, 102
BsuI	GTATCC	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	528, 834, 875, 896
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	3 cut(s)	29, 377, 576
BveI	ACCTGC	1 cut(s)	631
CaiI	CAGNNNCTG	2 cut(s)	115, 376
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	631
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	620, 716, 907
CviAII	CATG	8 cut(s)	91, 144, 256, 325, 589, 607, 671, 825
CviQI	GTAC	3 cut(s)	620, 716, 907
DdeI	CTNAG	2 cut(s)	163, 464
DpnI	GATC	4 cut(s)	40, 104, 234, 611
DpnII	GATC	4 cut(s)	38, 102, 232, 609
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	249, 435
Eco88I	CYCGRG	1 cut(s)	948
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	968
FaeI	CATG	8 cut(s)	94, 147, 259, 328, 592, 610, 674, 828
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 116, 148
FatI	CATG	8 cut(s)	90, 143, 255, 324, 588, 606, 670, 824
FauI	CCCGC	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	5 cut(s)	492, 627, 935, 995, 998
FokI	GGATG	4 cut(s)	515, 841, 882, 903
Fsp4HI	GCNGC	5 cut(s)	492, 627, 935, 995, 998
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	5 cut(s)	492, 627, 935, 995, 998
HapII	CCGG	1 cut(s)	939
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	8 cut(s)	94, 147, 259, 328, 592, 610, 674, 828
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	6 cut(s)	10, 539, 676, 754, 961, 973
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	2 cut(s)	70, 685
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	111, 1034
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	5 cut(s)	82, 139, 184, 361, 580
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	7 cut(s)	151, 328, 370, 536, 550, 894, 997
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 173, 599, 667
HpyF3I	CTNAG	2 cut(s)	163, 464
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	8 cut(s)	94, 147, 259, 328, 592, 610, 674, 828
HspAI	GCGC	1 cut(s)	629
Kzo9I	GATC	4 cut(s)	38, 102, 232, 609
LmnI	GCTCC	2 cut(s)	27, 991
Lsp1109I	GCAGC	5 cut(s)	478, 613, 921, 981, 1009
LweI	GCATC	2 cut(s)	881, 925
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	5 cut(s)	76, 305, 454, 772, 877
MalI	GATC	4 cut(s)	40, 104, 234, 611
MboI	GATC	4 cut(s)	38, 102, 232, 609
MboII	GAAGA	5 cut(s)	35, 47, 242, 434, 736
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	2 cut(s)	38, 102
MluCI	AATT	5 cut(s)	168, 405, 438, 699, 846
MlyI	GAGTC	5 cut(s)	4, 548, 670, 955, 967
MmeI	TCCRAC	2 cut(s)	412, 847
MnlI	CCTC	7 cut(s)	192, 428, 806, 893, 932, 957, 974
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	3 cut(s)	123, 204, 276
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	934
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	2 cut(s)	939, 970
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	1 cut(s)	970
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	4 cut(s)	27, 173, 599, 667
NciI	CCSGG	1 cut(s)	939
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	4 cut(s)	38, 102, 232, 609
NlaIII	CATG	8 cut(s)	94, 147, 259, 328, 592, 610, 674, 828
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	948
PagI	TCATGA	1 cut(s)	90
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	1 cut(s)	754
PflFI	GACNNNGTC	1 cut(s)	1028
PflMI	CCANNNNNTGG	1 cut(s)	851
PkrI	GCNGC	5 cut(s)	493, 628, 936, 996, 999
PleI	GAGTC	5 cut(s)	4, 547, 670, 955, 967
PpsI	GAGTC	5 cut(s)	4, 547, 670, 955, 967
Psp6I	CCWGG	1 cut(s)	968
PspGI	CCWGG	1 cut(s)	968
PspN4I	GGNNCC	1 cut(s)	594
PspXI	VCTCGAGB	1 cut(s)	948
PstI	CTGCAG	1 cut(s)	999
PstNI	CAGNNNCTG	2 cut(s)	115, 376
PsuI	RGATCY	2 cut(s)	38, 102
PsyI	GACNNNGTC	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	934
RsaI	GTAC	3 cut(s)	621, 717, 908
RsaNI	GTAC	3 cut(s)	620, 716, 907
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	123, 204, 276
SatI	GCNGC	5 cut(s)	492, 627, 935, 995, 998
Sau3AI	GATC	4 cut(s)	38, 102, 232, 609
SchI	GAGTC	5 cut(s)	4, 548, 670, 955, 967
ScrFI	CCNGG	2 cut(s)	939, 970
SfaNI	GCATC	2 cut(s)	881, 925
SfcI	CTRYAG	1 cut(s)	995
Sfr274I	CTCGAG	1 cut(s)	948
SlaI	CTCGAG	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	797, 948
SmoI	CTYRAG	2 cut(s)	797, 948
Sse9I	AATT	5 cut(s)	168, 405, 438, 699, 846
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	937, 968
TaaI	ACNGT	5 cut(s)	82, 139, 184, 361, 580
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	636, 949
TasI	AATT	5 cut(s)	168, 405, 438, 699, 846
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	3 cut(s)	123, 204, 276
Tru9I	TTAA	3 cut(s)	123, 204, 276
TscAI	CASTG	3 cut(s)	29, 377, 583
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	5 cut(s)	491, 626, 934, 994, 997
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	6 cut(s)	107, 145, 313, 746, 813, 872
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	3 cut(s)	29, 377, 583
Tth111I	GACNNNGTC	1 cut(s)	1028
Van91I	CCANNNNNTGG	1 cut(s)	851
XapI	RAATTY	2 cut(s)	405, 438
XhoI	CTCGAG	1 cut(s)	948
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.